DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30043 and VPS70

DIOPT Version :9

Sequence 1:NP_725143.1 Gene:CG30043 / 246412 FlyBaseID:FBgn0050043 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_012660.1 Gene:VPS70 / 853590 SGDID:S000003887 Length:811 Species:Saccharomyces cerevisiae


Alignment Length:474 Identity:98/474 - (20%)
Similarity:171/474 - (36%) Gaps:94/474 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 DVQSPTGGYVFNDMVNMYQGIHNVIVKLSSKSSQ-----SESYLLLNSHFDSKPGSPGSGDDGTM 187
            |..|.||.....|.|:::..:...|.::||....     :|..:::.:|.||. .|..:||..:.
Yeast   397 DFGSFTGPSSSIDKVHLHNELTYNIKEMSSVEVSIPGIFTEGEIIIGAHRDSL-ASSSAGDANSG 460

  Fly   188 VVVMMEVLRQMSISEIPFEH------PIVFLFNGAEENPLQASHGFITQHKWAEKCKAFINLEVG 246
            ..:::|:.|.||..   .:|      ||..:....|.:.|..|..:...|....:.:|.:.|.:.
Yeast   461 SAILLEIARGMSKL---LKHGWKPLRPIKLISWDGERSGLLGSTDYAEAHAAILRRRALVYLNLD 522

  Fly   247 GSGGRDLLFQSGPN-----NPWLMKYYRQHAKHPFATTMAEEIFQSGVLPSDSDFRIFRDYGNIA 306
            .:       .||.|     ||.|.....:.||      :.|       .....|:.:|..:...:
Yeast   523 NA-------ISGTNFHCKANPLLQDVIYEAAK------LTE-------FNGHEDWSLFDHWKYTS 567

  Fly   307 GLDIAQIENGYVYHTAFDTYENVPGRSIQNSGNNVLALVRAYSNA-------SELYNTESDDSHA 364
            ...|:.:: |...:|:|..:..||....|.:.|:....| .:||:       .|.:.......|.
Yeast   568 NATISLLD-GLSSYTSFQYHLGVPAAHFQFNANDTSGAV-YHSNSVFDSPTWLEKFTNSDYKLHN 630

  Fly   365 VFFDFLGLFFVYYTETTGIVVNCVIGVLSLVLVGCSVWRMCHQSEEASLPQISIWFLSILGLHVV 429
            ....|:||..:..:|......|..: .|..:......|   |.:..::.||..          .|
Yeast   631 TMAMFVGLTTLMLSENELARFNTHV-YLKKIYNWYIAW---HSNLSSAFPQDD----------EV 681

  Fly   430 GFLLCICLPLLMAVLFDAGDRSLTYFTSNWLVFGLYVCPAIIGLVLPLTLYYTLLPNEKLSQAYQ 494
            ..|....|.||...   ..:.|:.:...|.:::  ..|..    .||:..:|     :|:....:
Yeast   682 NSLAKRVLDLLKVA---TQEDSIQFDQQNGILY--KECRE----ALPVWAFY-----KKIKSYIK 732

  Fly   495 LQLSLHAHLVVQALLALILTAMGLRS----QYLCLISMIFYG--GALLINLVSTLH--DRGYYWV 551
            ||.|   :...:.:..|.:|..||:.    :|..|....|.|  |.:|..|...|.  ||.    
Yeast   733 LQRS---NSKSKQIDQLFITHRGLKDREWMKYSLLAPSKFEGSVGEVLPGLHEGLADIDRN---- 790

  Fly   552 PIVMFLQVL--PFSYFCYL 568
            .::.:|.:|  .||...||
Yeast   791 EVIQWLTILLSQFSNVRYL 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30043NP_725143.1 M28_Fxna_like 71..377 CDD:193497 56/271 (21%)
PMT_2 493..>634 CDD:304453 23/86 (27%)
VPS70NP_012660.1 Zinc_peptidase_like 135..>187 CDD:417508
PA_GCPII_like 187..413 CDD:239036 6/15 (40%)
M28_PMSA_TfR_like 419..649 CDD:349871 51/255 (20%)
TFR_dimer <731..799 CDD:398094 18/74 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2234
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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