DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sprt and Pard3b

DIOPT Version :9

Sequence 1:NP_610683.1 Gene:sprt / 246397 FlyBaseID:FBgn0082585 Length:634 Species:Drosophila melanogaster
Sequence 2:XP_006496361.1 Gene:Pard3b / 72823 MGIID:1919301 Length:1238 Species:Mus musculus


Alignment Length:658 Identity:131/658 - (19%)
Similarity:220/658 - (33%) Gaps:210/658 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 NQETASTTTTSTHCSTTGRRRKGGSLGGTLSSRSTRSESKELRSALQDREAVIQNLRIQLCLGKL 113
            |.:.||.|..:...     |.|.| |.....:|::..|.:|..|..|.:...:..      ||: 
Mouse   344 NNDGASRTKAAPPA-----RGKPG-LKAVHLTRASSPEGEEPASPQQSKSPRVPR------LGR- 395

  Fly   114 PRPTGPPLDE-----SEKPAAEQKLNRLKTEAEN---------------KRIKIKNL--KSALEK 156
             :|:.|.|..     |:|.|.:.|:: ||...|.               ..|.:||:  |.|..|
Mouse   396 -KPSSPSLSPLMGFGSKKNAKKIKID-LKKGPEGLGFTVVTRDSSIHGPGPIFVKNILPKGAAVK 458

  Fly   157 ---LDITDNI------DIRIRQAELEYALGRE----ELQMLSIVEEARALQARLEKSKPEAQT-- 206
               |...|.|      |:..|..|...|:.|.    |...|.|..:..:...|..|.:|:...  
Mouse   459 DGRLQSGDRILEVNGRDVTGRTQEELVAMLRSTKQGETVSLVIARQEGSFLPRELKGEPDCYALS 523

  Fly   207 ------------LYNIISSGVSLSLHAVHATSGRWAVQQRTDQPGFYVEWALEGDGLYK------ 253
                        |.:..|:|:.:||      .|..:.:..||. |.:::..:.|...:|      
Mouse   524 LESSEQLTLEIPLNDSGSAGLGVSL------KGNKSRETGTDL-GIFIKSIIHGGAAFKDGRLRM 581

  Fly   254 GDRILEINGRLVTGKSKEELQKQVGNS--------GKCQMVVLRKKSVPIPQKQLDQEKENNMRL 310
            .|:::.:||..:.|||..|..:.:..|        |..|:|:||:     |::.|::..|.....
Mouse   582 NDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR-----PERPLEELSECGALS 641

  Fly   311 QHRISYLEEQVRELQTVKEHHPS-------QQQQQQQQQQQNPQQNPQQNPQQTSSNQSQHVTSI 368
            :......:|   .|.|.:.:..|       ...|.:::....|.....:|               
Mouse   642 RPGFENCQE---ALSTSRRNDSSILYPFGTYSPQDKRKDLLLPSDGWAEN--------------- 688

  Fly   369 SISSPPSTPPEKPLIF-------------------QRGNYIT----------TLVGGKPIELMGD 404
              ..|||.||...|.:                   |..|:.|          .|...|.::|:.|
Mouse   689 --EVPPSPPPHPALEWGLEDFSHSSGVDSTGYFPDQHVNFRTVTPVRQPELINLKASKSMDLVPD 751

  Fly   405 DMASTQTPPGHVTKTLIKENTHIDLRDRLSHMYSM---PSKSLSASKISINSDSAYMQHHRRDKE 466
            :        |.|.          .|.||.|.....   |:..|..|....:..:|..:..:.|..
Mouse   752 E--------GKVQ----------SLADRRSDSPGKDFGPTLGLKKSSSLESLQTAVAEVRKNDLP 798

  Fly   467 RHRDRQHRERPRDPLQQQQQLHREHLMSTHARSVEHLNHYNGLDRRRDTPRQSESNTLRARLPSD 531
            .||.|.|..|.|...:..:.                     .:|:..|.|.:::::.|..:  |.
Mouse   799 FHRPRPHMVRGRGCNESFRA---------------------AIDKSYDGPEEADADGLSDK--SS 840

  Fly   532 MRSVKSLDFDS-----------ENESKPATETRTTRPTPPKKPLRLSLQRAQSLQTVELHPCADI 585
            .....:|:.:|           ||::|...:|:.......|..|::..::.:     |.|  .|.
Mouse   841 RSGHTALNCESAPQGNPELDNVENKAKNIKKTKEKEKKKGKGKLKVKEKKLK-----EEH--EDA 898

  Fly   586 ERKRPMKR 593
            |||  |||
Mouse   899 ERK--MKR 904

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sprtNP_610683.1 PDZ <247..288 CDD:294084 13/54 (24%)
Pard3bXP_006496361.1 DUF3534 2..74 CDD:338230
PDZ_signaling 236..323 CDD:238492
PDZ 415..504 CDD:214570 21/89 (24%)
PDZ_signaling 536..624 CDD:238492 22/94 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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