DRSC/TRiP Functional Genomics Resources

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Protein Alignment sprt and Pdzd2

DIOPT Version :9

Sequence 1:NP_610683.1 Gene:sprt / 246397 FlyBaseID:FBgn0082585 Length:634 Species:Drosophila melanogaster
Sequence 2:XP_038959013.1 Gene:Pdzd2 / 65034 RGDID:619958 Length:2818 Species:Rattus norvegicus


Alignment Length:490 Identity:96/490 - (19%)
Similarity:158/490 - (32%) Gaps:155/490 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 PGFYVEWALEG------DGLYKGDRILEING-----------------------RLVTGK----- 268
            ||.|:.....|      ..|.:||:|||:|.                       |||.|:     
  Rat   756 PGIYIHSLAPGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHAILSKCPPGPVRLVIGRHPNPK 820

  Fly   269 -SKEELQKQVGNSGKCQMVVLRKKSVP---IPQKQLDQEKENNMRLQHRIS--YLEEQVRELQ-- 325
             |::|:.:.:..|  .........|.|   .|.|.....|::::..:..:|  ::.:....|.  
  Rat   821 VSEQEMDEVIARS--TYQESREANSSPGLGTPLKSPSLAKKDSLLSESELSQYFVHDGQGSLSDF 883

  Fly   326 ----TVKEHHPSQQQQQQQQQQQNPQQNPQQ---------NPQQTSSNQSQHVTSISISSPPSTP 377
                :..|.||....:..:.....|..:..:         ..|:||....:.||....:|.|.:|
  Rat   884 VVAGSEDEDHPGSGYETSEDGSLLPVPSAHKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSP 948

  Fly   378 P--EKPLIFQRGNYITTLVGGKPIELM---GDDMASTQTPPGHVTKTLIKENTHIDLRDRLSHMY 437
            .  ..||:.||........||...|..   ||.::.....|| ..|.|::::|.           
  Rat   949 QVLRNPLLRQRRVRCYDSNGGSDDEDFDGEGDCISLPGVLPG-PGKPLVEDDTR----------- 1001

  Fly   438 SMPSKSLSASKISINSDSAYMQHHRRDKERHRDRQHRERPRDPLQQQ--------QQLHREHLMS 494
              |:.:.|:..|.:|                   :..||.:.||..:        ..|..||.: 
  Rat  1002 --PALTTSSKSIDVN-------------------KQEERLQKPLVSKACSVPLLGSSLDSEHSI- 1044

  Fly   495 THARSVEHLNHYNG-------LDRRRDTPRQSESNTLRARLPSDMRSVKSLDF----DSENESKP 548
                    ||...|       |....:||:.....:.|..: |..||...|::    |:::...|
  Rat  1045 --------LNGTGGTPPKVASLPGSGETPKNGPRGSGRKEM-SGSRSSPKLEYRVPTDTQSPRSP 1100

  Fly   549 ATETRTTRPTPPKKPLRLSLQRAQSLQTVELH----------------PCADIERKRPMKRVHHN 597
            ...|     :||:|...| :.|.:.:..:..|                |||. :.|.....|...
  Rat  1101 ENHT-----SPPQKSENL-VSRHKPVARISPHYKRSDAEEAPGGTANGPCAQ-DLKVQASPVKDP 1158

  Fly   598 NNNNNKGGE-------SPTGEGQTMLIENCSPMHT 625
            ......||.       :|| .|.:.:..||.|..|
  Rat  1159 VTGRQPGGTAEKELQGNPT-PGDSSVPTNCGPAST 1192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sprtNP_610683.1 PDZ <247..288 CDD:294084 15/75 (20%)
Pdzd2XP_038959013.1 PDZ_signaling 335..416 CDD:238492
PDZ_signaling 590..671 CDD:238492
PDZ_signaling 729..813 CDD:238492 13/56 (23%)
PHA03247 <985..1446 CDD:223021 50/259 (19%)
PDZ_signaling 2603..2677 CDD:238492
PDZ_signaling 2731..2813 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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