DRSC/TRiP Functional Genomics Resources

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Protein Alignment sprt and Synj2bp

DIOPT Version :9

Sequence 1:NP_610683.1 Gene:sprt / 246397 FlyBaseID:FBgn0082585 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_072121.2 Gene:Synj2bp / 64531 RGDID:69400 Length:145 Species:Rattus norvegicus


Alignment Length:112 Identity:23/112 - (20%)
Similarity:42/112 - (37%) Gaps:32/112 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 NIISSGVSLSLHAVHATSGRWAVQQRTDQPGFYV-----EWALEGDG-LYKGDRILEINGRLVTG 267
            |:......|..:.|..|..::.    ::..|.||     :.|...|| |.:||:||.:||:.:..
  Rat    15 NLTRGPSGLGFNIVGGTDQQYV----SNDSGIYVSRIKEDGAAARDGRLQEGDKILSVNGQDLKN 75

  Fly   268 KSKEELQKQVGNSGKCQMVVLRKKSVPIPQKQLDQEKENNMRLQHRI 314
            ...::......|:|...                      ::|:|||:
  Rat    76 LLHQDAVDLFRNAGYAV----------------------SLRVQHRL 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sprtNP_610683.1 PDZ <247..288 CDD:294084 11/41 (27%)
Synj2bpNP_072121.2 PDZ_signaling 13..97 CDD:238492 20/107 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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