DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sprt and pdzd3b

DIOPT Version :9

Sequence 1:NP_610683.1 Gene:sprt / 246397 FlyBaseID:FBgn0082585 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001124259.1 Gene:pdzd3b / 566852 ZFINID:ZDB-GENE-081022-151 Length:524 Species:Danio rerio


Alignment Length:417 Identity:74/417 - (17%)
Similarity:132/417 - (31%) Gaps:158/417 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 STRSESKELRSALQDREAVIQNLR------IQLC---------------------LGKLPRPTG- 118
            :.||..|:....|:..||.::||.      .|:|                     :.|..|..| 
Zfish    81 AARSGLKDGDRLLEVNEAFVENLEHTEVSGSQICFLVLDEKAYEQVVSEGRDLREMAKAARGEGW 145

  Fly   119 --PPLDESEKPAAEQKLNRLKTEAENKRIKIKNLK----------------------------SA 153
              |.|....|.|.....|.|..|.|.::..:..:|                            ||
Zfish   146 RPPHLCHIRKDAHGMGFNILPVEGEKRKFAVSPVKGGAAERAGVRKGDHLIWIDGAMASELTHSA 210

  Fly   154 LEKL--DITDNIDIRIRQAELEYALGREELQMLSIVEEARALQARLEKSKPEAQTLYNIISSGVS 216
            :.|:  ..:.::.:.:..::.|.:..|.::.:|..:.:|..:..|.::                 
Zfish   211 ISKMVKKCSSHMTVLVIDSDTEKSYARRKMPILPAMADAENMPYRPQR----------------- 258

  Fly   217 LSLHAVHATSG-RWAVQQRTDQPGFYVEWALEGD--------GLYKGDRILEINGRLVTGKSKEE 272
              ||.|....| .:.::|.....|..|....|.|        |:.:|:.:||:||......|.::
Zfish   259 --LHLVMGPDGYGFLLRQEKGGAGRTVHMVREVDKGSPAELGGVKEGEMLLEVNGESTDPLSHKD 321

  Fly   273 LQKQVGNSGKCQMVVLRKKS------------------VPIPQKQLDQEKENNMRLQHRISYLEE 319
            :...:..||  |.|.|...:                  |.:|                  |.|.|
Zfish   322 VVSNIRQSG--QQVTLTTMTPQGYDFYTKLGLSPLLFCVDVP------------------SALPE 366

  Fly   320 QVRELQ-TVKEHHPSQQQQQQQQQQQNPQQNPQQNP-------QQTSSNQSQHVTSISISSPPST 376
            ..:|:. |.|...|..:          ||:..|.||       :::|:....|:..:.       
Zfish   367 VKKEIPVTPKPAVPPVE----------PQEEVQINPNVRRCILERSSAGFGFHLGCVQ------- 414

  Fly   377 PPEKPLIFQRGNYITTLVGGKPIELMG 403
              :||     |.:|:.:..|.|.:..|
Zfish   415 --QKP-----GTFISQVAAGSPGQSSG 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sprtNP_610683.1 PDZ <247..288 CDD:294084 13/48 (27%)
pdzd3bNP_001124259.1 PDZ_signaling 44..118 CDD:238492 10/36 (28%)
PDZ 148..227 CDD:214570 12/78 (15%)
PDZ_signaling 264..336 CDD:238492 17/73 (23%)
PDZ 393..473 CDD:214570 9/56 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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