DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sprt and lnx2b

DIOPT Version :9

Sequence 1:NP_610683.1 Gene:sprt / 246397 FlyBaseID:FBgn0082585 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_998105.2 Gene:lnx2b / 564464 ZFINID:ZDB-GENE-040426-2500 Length:678 Species:Danio rerio


Alignment Length:613 Identity:116/613 - (18%)
Similarity:204/613 - (33%) Gaps:185/613 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 TNQETASTTTTSTH---CSTTGRRRKGGSLGGTLSSRSTRSESKELRSALQDREAVIQNLRIQLC 109
            |..:|:|..|..|.   |...|:...|              :...|   .:.::.|...|...:|
Zfish     2 TESKTSSLPTGVTWARVCKECGQCHDG--------------QDSHL---FEYQDEVDDELVCHIC 49

  Fly   110 LGKLPRPTGPPL--------------DESEKPAAEQKLNRLKTEAENKRIKIKNLKSALEKLDIT 160
            |..|.:|...|.              |:...|...|::...:..|.:  :.::||   |:||.:.
Zfish    50 LQPLLQPMDTPCGHTYCFQCLSNFLHDQDFCPVDRQRIQLQQCRASS--LLVRNL---LDKLAVL 109

  Fly   161 DNIDIRIRQAELEYALGREELQ---------MLSIVEEARALQARLEKSKPEAQTLYNIISSGVS 216
            ...     ::|.|.::.|.|||         ...:.|||.      .|.:|....|....|.| .
Zfish   110 CPF-----RSECELSMQRCELQPHLHNRCPAFKRLREEAE------RKKRPSWNELKGSKSDG-D 162

  Fly   217 LSLHAVHATSGRWAVQQRTDQPGFYVEWALEGDG----------------LYKGDRILEINGRLV 265
            |:......|.||.|......:||.......||:.                |::.|...::..|:|
Zfish   163 LADAKSAQTIGRTAQLSAPSEPGLVNPAFEEGEDDTPLRCSLVAEATVVELFREDPGEDLGLRIV 227

  Fly   266 TGKSKE----ELQKQVGNSGKCQMVVLRKKSVPIPQKQLDQEKENNMRLQHRISYLEEQVRELQT 326
            .||...    .:|:.|.:|     :|.|...:......|:....:...:.|.        |.:..
Zfish   228 GGKDTPLGNIVIQEIVRDS-----LVARDGKLAPGDHILEVNDVSLASISHS--------RAIAV 279

  Fly   327 VKEHHPSQQQQQQQQQQQNPQQNPQQNPQQTSSNQSQHVTSISISSPPSTPPEKPLIFQRGNYIT 391
            :::  |..:.:....|::..:..|:.:.|.::|..:|         .|||......:.|     .
Zfish   280 IRQ--PCSRLRLTVMQEKGFKPRPEHHTQPSASPPTQ---------SPSTNQNHGTVIQ-----V 328

  Fly   392 TLVGGKPIELMGDDMASTQTPPGHVTKTL-----------IKENTHI------DLRDRLSHMYSM 439
            |||..:..|.:|..:......||.....|           ::.|..:      |||      :..
Zfish   329 TLVKHERSEALGIKLIRKSEEPGVFILDLLPGGLAAKDGKLRNNDKVLGINGQDLR------HGT 387

  Fly   440 PSKS---LSASKISINSDSAYMQHHRRD-KERHRDRQHRERPRDPLQQQQQLHREHL------MS 494
            |..:   :.||::.:|    ::....:| .|...:.|.|...|.|..|..:.|.|::      .|
Zfish   388 PESAAQIIQASEMRVN----FVVMRLQDVSEEGGEGQSRGARRVPEPQYFRRHSEYMKEPPGGFS 448

  Fly   495 THARSVEHLNHYNGLDRRRDTPRQSESNTL------RARLPSDMRSVK----------------- 536
            :..::|          ..:..||||...|:      |:|||..:.||:                 
Zfish   449 SQEKTV----------TLKKEPRQSLGITIAGGRDCRSRLPVYITSVQPVGCLHRDGTVKTGDVL 503

  Fly   537 ------SLDFDSENESKPATETRTTRPT 558
                  .|...:.||:....:|:|.:.|
Zfish   504 LSINGIDLTHLTYNEAVTVLKTQTAQST 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sprtNP_610683.1 PDZ <247..288 CDD:294084 11/60 (18%)
lnx2bNP_998105.2 RING 46..82 CDD:214546 6/35 (17%)
PDZ_signaling 210..291 CDD:238492 15/95 (16%)
PDZ_signaling 325..406 CDD:238492 17/95 (18%)
PDZ_signaling 451..537 CDD:238492 18/91 (20%)
PDZ_signaling 587..671 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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