DRSC/TRiP Functional Genomics Resources

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Protein Alignment sprt and ush1c

DIOPT Version :9

Sequence 1:NP_610683.1 Gene:sprt / 246397 FlyBaseID:FBgn0082585 Length:634 Species:Drosophila melanogaster
Sequence 2:XP_009296312.1 Gene:ush1c / 564412 ZFINID:ZDB-GENE-060312-41 Length:586 Species:Danio rerio


Alignment Length:468 Identity:91/468 - (19%)
Similarity:159/468 - (33%) Gaps:147/468 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 KQKSASMTILNPKGCGSAVKYSLHSTAETNQETASTTTTSTHCSTTGRRRKGGSLGGTLSSRSTR 84
            |.|...:...:|:|.|.:|:..|        |..|    ....|...:..:.|::|..:.....|
Zfish    84 KLKEVRLDRTHPEGLGLSVRGGL--------EFGS----GLFISQIVKDGQAGNVGLQVGDEIVR 136

  Fly    85 SESKELRSALQDREAVIQNLRIQLCLGKLPRPTG--PPLDESEKPAAEQKLNRLKTEAENKRIKI 147
            .....:.|.:  .|.||..::.:..:....|..|  |....|::|...|.:::..:|:..|...|
Zfish   137 INGYSISSCI--HEEVINLIKTKKTVSLKVRHVGMIPVKSSSDEPLKWQFVDQFVSESGEKSNSI 199

  Fly   148 KNLKSALEKLDITDNIDIRIRQAELEYALGREELQMLSIVEEARALQARLEKSKPEAQTLYNIIS 212
            ..|.|                       :|..|:                 |.|....:|.....
Zfish   200 AGLAS-----------------------IGGNEI-----------------KEKKVFLSLVGTKG 224

  Fly   213 SGVSLSLHAVHATSGRWAVQQRTDQPGFYVEWALEGD-----GLYKGDRILEINGRLVTGKSKEE 272
            .|:|:|       ||      .|.:||.||.....|.     ||..||:|:|:||...|..|.:|
Zfish   225 MGISIS-------SG------PTKKPGIYVSNVKPGSLSAEVGLQVGDQIVEVNGVEFTNLSHQE 276

  Fly   273 LQKQVGNSGKCQMVVL-----------------------------RKKSV-----PIPQKQLDQE 303
            ..:.:.:|....:.||                             .:|.|     .|.::|.::|
Zfish   277 AVRVLKSSRSLTITVLTGAGSELFMTDEERLAVEARHELDRQELMHQKKVALETNKIVKEQQEKE 341

  Fly   304 KENNMRLQHRISYLEEQVR-ELQTV----KEHHPSQQQ---QQQQQQQQNPQQNPQQNPQQTSSN 360
            ::..|.:..:.:..||:.| |::.:    |:||...:.   .:::::..:|..:|          
Zfish   342 RQRKMEISQKAAEEEERYRKEMERIEAAEKKHHKEWEDDWGSKEKKKSVSPAASP---------- 396

  Fly   361 QSQHVTSISISSPPST---PPEKPLIFQRGNYITTLVGGKPIELMGDD-----MASTQTPPGHVT 417
                      |.||.|   |..||......:|....  |:..:...||     |.:.:...|...
Zfish   397 ----------SPPPPTRLAPSPKPKTSTADSYEEET--GEGFQKYVDDFDPHSMFTAEQIAGRDV 449

  Fly   418 KTL-IKENTHIDL 429
            :.| ||:...:||
Zfish   450 RLLRIKKEGKLDL 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sprtNP_610683.1 PDZ <247..288 CDD:294084 13/45 (29%)
ush1cXP_009296312.1 harmonin_N 2..80 CDD:259819
PDZ_signaling 85..165 CDD:238492 16/93 (17%)
PDZ_signaling 212..292 CDD:238492 25/92 (27%)
RILP-like 317..>379 CDD:304877 13/61 (21%)
PDZ_signaling 447..534 CDD:238492 5/16 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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