DRSC/TRiP Functional Genomics Resources

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Protein Alignment sprt and Ush1c

DIOPT Version :9

Sequence 1:NP_610683.1 Gene:sprt / 246397 FlyBaseID:FBgn0082585 Length:634 Species:Drosophila melanogaster
Sequence 2:XP_006229284.1 Gene:Ush1c / 308596 RGDID:1303329 Length:910 Species:Rattus norvegicus


Alignment Length:427 Identity:83/427 - (19%)
Similarity:154/427 - (36%) Gaps:140/427 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 ELQMLSIVEEARALQARLEKSKPEAQTLYNIISSGVSLSLHAVHATSGRWAVQQRTDQPGFYVEW 244
            |...|:.....:..:.||::..||          |:.||:        |..::...   |.::..
  Rat    73 EYDQLTPRRSRKLKEVRLDRLHPE----------GLGLSV--------RGGLEFGC---GLFISH 116

  Fly   245 ALEGD-----GLYKGDRILEINGRLVTGKSKEELQKQVGNSGKCQMVVLRKKSVPIPQKQL---- 300
            .::|.     ||..||.|:.|||..::..:.||:..          ::..||:|.|..:.:    
  Rat   117 LIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVIN----------LIRTKKTVSIKVRHIGLIP 171

  Fly   301 -DQEKENNMRLQHRISYLEEQVRELQTVKEHHPSQQQQQQQQQQQNPQQNPQQNPQQTSSNQSQH 364
             ....|..::.|    |:::.|.|...|:                    ....:|...::.:.:.
  Rat   172 VKSSPEEPLKWQ----YVDQFVSESGGVR--------------------GGLSSPGNRTTKEKKV 212

  Fly   365 VTSI--------SISSPPSTPPEKPLIF----QRGNYITTL---VGGKPIELMGDDMASTQTPPG 414
            ..|:        ||||.|.   :||.||    :.|:....:   .|.:.:|:.|.|.        
  Rat   213 FISLVGSRGLGCSISSGPI---QKPGIFVSNVKPGSLSAEVGLETGDQIVEVNGIDF-------- 266

  Fly   415 HVTKTLIKENTHIDLRDRLSHMYSMPSKSLSASKISINSDSAYMQHHRRDKERHRD-RQHRERPR 478
                      |::|.::.::.:.|  |:||:.|.::......:|    .|:||..: |||.    
  Rat   267 ----------TNLDHKEAVNVLKS--SRSLTISIVAGAGRELFM----TDRERLEEARQHE---- 311

  Fly   479 DPLQQQQQLHREHLMSTHARSVEHLNHYNGLDRRRDTPRQSESNTLRARLPSDMRSVKSLDFDSE 543
              ||:|:.|.::.| :..:..:        |..:::..||......:.....:.|..|.::..||
  Rat   312 --LQRQELLMQKRL-AMESNKI--------LQEQQEMERQRRKEIAQKAAEENERYRKEMEQISE 365

  Fly   544 NESK-----------------PATETRTTRPTPPKKP 563
            .|.|                 |.|.|....|.|.:||
  Rat   366 EEEKFKKQWEEDWGSKEQLILPKTITAEVHPVPLRKP 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sprtNP_610683.1 PDZ <247..288 CDD:294084 11/45 (24%)
Ush1cXP_006229284.1 harmonin_N 2..80 CDD:259819 2/6 (33%)
PDZ_signaling 85..165 CDD:238492 24/110 (22%)
PDZ_signaling 209..289 CDD:238492 22/102 (22%)
Cgr1 <316..>358 CDD:281823 6/50 (12%)
PDZ_signaling 751..838 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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