DRSC/TRiP Functional Genomics Resources

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Protein Alignment sprt and Pdzd3

DIOPT Version :9

Sequence 1:NP_610683.1 Gene:sprt / 246397 FlyBaseID:FBgn0082585 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_573489.2 Gene:Pdzd3 / 170761 MGIID:2429554 Length:498 Species:Mus musculus


Alignment Length:157 Identity:34/157 - (21%)
Similarity:58/157 - (36%) Gaps:40/157 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 SALEKLDIT----------DNIDIRIRQAELEYALGREELQMLSIVEEARALQAR-----LEKSK 201
            :::|||...          |.:.:.:...|:|....:..:.:.:.:.|..||.|:     :||. 
Mouse   206 ASVEKLTYNQLNRKLWQSGDQVTLLVAGLEVEEQCHQLGMPLAAPLAEGWALPAKPRCLNIEKG- 269

  Fly   202 PEAQTLYNIISSGVSLSLHAVHATSGR-----WAVQQRTDQPGFYVEWALEGDGLYKGDRILEIN 261
            ||          |....|.......||     |.|     .||...:.|    |:..|||::.:.
Mouse   270 PE----------GFGFLLREEKGLDGRLGQFLWDV-----DPGLPADKA----GMKAGDRLVAVA 315

  Fly   262 GRLVTGKSKEELQKQVGNSGKCQMVVL 288
            |..|.|...||...::...|.|..:::
Mouse   316 GESVDGLGHEETVSRIRAQGSCVSLIV 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sprtNP_610683.1 PDZ <247..288 CDD:294084 11/40 (28%)
Pdzd3NP_573489.2 PDZ_signaling 47..127 CDD:238492
PDZ_signaling 155..232 CDD:238492 4/25 (16%)
PDZ 260..345 CDD:214570 24/103 (23%)
PDZ_signaling 407..471 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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