DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sprt and Lnx1

DIOPT Version :9

Sequence 1:NP_610683.1 Gene:sprt / 246397 FlyBaseID:FBgn0082585 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001153049.1 Gene:Lnx1 / 16924 MGIID:1278335 Length:728 Species:Mus musculus


Alignment Length:558 Identity:107/558 - (19%)
Similarity:170/558 - (30%) Gaps:207/558 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 AHHRAFAKQKSASMTILNPKGCGSAVKYSLH---STAET-----------------NQETASTTT 57
            |.|....|.:........|.||.|.:..:|.   |.|.|                 :.|......
Mouse   135 ASHYGLTKDRKRRSQDGCPDGCASLMATTLSPEVSAAATISLMTDEPGLDNPAYVSSVEDGEPVA 199

  Fly    58 TSTHCSTTGRRRKGGSLGGTLSSRSTRSESKELRSALQDRE--AVIQNLRIQLCLGKLPRPTGPP 120
            .|:....:.|.|.......|:.|||.:..::.| |||:..:  :|:.|   .:..|:        
Mouse   200 NSSDSGRSNRTRARPFERSTMRSRSFKKINRAL-SALRRTKSGSVVAN---HVDQGR-------- 252

  Fly   121 LDESEK---PAAEQKLNRLKTEAENKRIKIKNLKSALEKLDITDNIDIRI--------------- 167
             |.||.   |....:|..|..:.|...|||       .:.|.::::.||:               
Mouse   253 -DNSENTTVPEVFPRLFHLIPDGEITSIKI-------NRADPSESLSIRLVGGSETPLVHIIIQH 309

  Fly   168 --------RQAEL-------------------EYA--LGREELQM--LSIVEEAR---------- 191
                    |...|                   .||  |.|:..|:  |:::.|.:          
Mouse   310 IYRDGVIARDGRLLPGDIILKVNGMDISNVPHNYAVRLLRQPCQVLRLTVLREQKFRSRSNAHVP 374

  Fly   192 --------ALQARLEKSKPEAQTLYNIISSGVSLSLHAVHATSGRWAVQQRTDQPGFYVEWALEG 248
                    :....|.||.||.|.       |:.|              .:|.|:||.::...|.|
Mouse   375 DSYGPRDDSFHVILNKSSPEEQL-------GIKL--------------VRRVDEPGVFIFNVLNG 418

  Fly   249 ------DGLYKGDRILEINGRLVTGKSKEELQKQVGNSGKCQMVVLRKKSVPIPQKQLDQEKENN 307
                  ..|.:.||:|.|||..:...|.|.                        ...|.|..|..
Mouse   419 GVADRHGQLEENDRVLAINGHDLRFGSPES------------------------AAHLIQASERR 459

  Fly   308 MRLQHRISYLEEQVRELQTVKEHHPSQQQQQQQQQQQNPQQNPQQNPQQTSSNQSQ--HVTSISI 370
            :.|     .:..|||:        .|....|:.....|.||:|....:.|:|..:.  |...:|:
Mouse   460 VHL-----VVSRQVRQ--------SSPDIFQEAGWISNGQQSPGPGERNTASKPAATCHEKVVSV 511

  Fly   371 SSPPSTPPEKPLIFQRGNYITTLVGG--------KPIELMGDDMASTQTPPGHVTKT---LIKEN 424
            ...||            ..:...|||        .||.::..:.....:..|.: ||   |:..|
Mouse   512 WKDPS------------ESLGMTVGGGASHREWDLPIYVISVEPGGVISRDGRI-KTGDILLNVN 563

  Fly   425 ----THIDLRDRLSHMYSMPS----KSLSASKISINSD 454
                |.:...:.::.:.|.||    |:|...:.....|
Mouse   564 GIELTEVSRTEAVAILKSAPSSVVLKALEVKEQEAQED 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sprtNP_610683.1 PDZ <247..288 CDD:294084 10/46 (22%)
Lnx1NP_001153049.1 mRING-HC-C3HC3D_LNX1 42..83 CDD:319693
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 185..220 4/34 (12%)
NPXY motif 185..188 0/2 (0%)
Interaction with MAGEB18. /evidence=ECO:0000250 186..244 12/58 (21%)
PDZ_signaling 276..360 CDD:238492 14/90 (16%)
PDZ_signaling 384..464 CDD:238492 27/129 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 481..500 6/18 (33%)
PDZ_signaling 506..589 CDD:238492 17/95 (18%)
PDZ_signaling 637..721 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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