DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30002 and psh

DIOPT Version :10

Sequence 1:NP_001163100.1 Gene:CG30002 / 246384 FlyBaseID:FBgn0260474 Length:311 Species:Drosophila melanogaster
Sequence 2:NP_573297.1 Gene:psh / 32832 FlyBaseID:FBgn0030926 Length:394 Species:Drosophila melanogaster


Alignment Length:278 Identity:75/278 - (26%)
Similarity:116/278 - (41%) Gaps:49/278 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 RSNQIPAVRIRFMITGGRKSSLMSQPWMA---FLHIASDLEMCRCGGSLISELFVLTAAHCFKMC 110
            |..|....::...|.||........|.||   ::...:|.   |||||||:..||||||||....
  Fly   131 RKQQRSGNQLVIHIVGGYPVDPGVYPHMAAIGYITFGTDF---RCGGSLIASRFVLTAAHCVNTD 192

  Fly   111 PRSKEIRVWLGELDLSSTSDCTTYNYERVCAPPVEEFTIDKWILHEEFNLFYPGYDIALIKLNKK 175
            ..:... |.||.:::.:..    ::|:.:.   :....|....:..::|      |||:::|.:.
  Fly   193 ANTPAF-VRLGAVNIENPD----HSYQDIV---IRSVKIHPQYVGNKYN------DIAILELERD 243

  Fly   176 VVFKDHIRPICLPLTDELLAFTLQLGQRFMAVGWG------KTESLRYANSTMEVDIRTEKCT-- 232
            ||..|:|||.||. ||   |.......:|...|||      :..|.....:.:|: :..::|.  
  Fly   244 VVETDNIRPACLH-TD---ATDPPSNSKFFVAGWGVLNVTTRARSKILLRAGLEL-VPLDQCNIS 303

  Fly   233 ------------DGRDTSFLCASGD--YVDTCNGDSGGPLLWKTTLFGKDRAVQFGVVSTGSQNC 283
                        .|...|.|||...  ..|.|.|||||||:.:..:......: .||:|:|. .|
  Fly   304 YAEQPGSIRLLKQGVIDSLLCAIDQKLIADACKGDSGGPLIHELNVEDGMYTI-MGVISSGF-GC 366

  Fly   284 GAGHKAYYMDVPTYMPWI 301
            .......|..|.:|:.:|
  Fly   367 ATVTPGLYTRVSSYLDFI 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30002NP_001163100.1 Tryp_SPc 62..301 CDD:238113 72/263 (27%)
pshNP_573297.1 CLIP 30..79 CDD:197829
Tryp_SPc 144..387 CDD:238113 73/265 (28%)
Blue background indicates that the domain is not in the aligned region.

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