DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30002 and Vch

DIOPT Version :10

Sequence 1:NP_001163100.1 Gene:CG30002 / 246384 FlyBaseID:FBgn0260474 Length:311 Species:Drosophila melanogaster
Sequence 2:NP_058841.1 Gene:Vch / 29265 RGDID:598277196 Length:247 Species:Rattus norvegicus


Alignment Length:259 Identity:83/259 - (32%)
Similarity:119/259 - (45%) Gaps:43/259 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 ITGGRKSSLMSQPWMAFLHIASDLEM-CRCGGSLISELFVLTAAHCFKMCPRSKEIRVWLGELDL 125
            |.||.:|...|:|:||.|.|.::..: ..|||.||:..||||||||     |.:||.|.||..|:
  Rat    21 IIGGVESIPHSRPYMAHLDIITERGLKDSCGGFLITRQFVLTAAHC-----RGREITVTLGAHDV 80

  Fly   126 SSTSDCTTYNYERVCAPPVEEFTIDKWILHEEFNLFYPG-YDIALIKLNKKVVFKDHIRPICLPL 189
            |...    |..:::        .::|..:|:.:| |.|. :||.|:||.|:|.....:..:.||.
  Rat    81 SKRE----YTQQKI--------KVEKQFIHKNYN-FLPNLHDIMLLKLEKQVELTPAVDVVPLPS 132

  Fly   190 TDELLAFTLQLGQRFMAVGWGKTESLRYANSTM-EVDIR---TEKCTDGR--DTSF-LCA--SGD 245
            ..:.    :..|......|||:|......:.|: ||.:|   .|.|...|  |.:| :|.  |..
  Rat   133 PSDF----IHPGTLCWTAGWGRTGVKDPTSDTLREVALRIMDEEACKIYRHYDNNFQVCVGLSTR 193

  Fly   246 YVDTCNGDSGGPLLWKTTLFGKDRAVQFGVVSTGSQNCGAGHKAYYMDVPTYMPWILEKMAEFS 309
            ......||||||||.        ..|..|:||.|..:  |...|.:..:..|:|||...:.|.|
  Rat   194 LQTAYTGDSGGPLLC--------AGVVHGIVSYGHPD--ATPPAVFTRIAPYVPWINTVLRESS 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30002NP_001163100.1 Tryp_SPc 62..301 CDD:238113 79/249 (32%)
VchNP_058841.1 Tryp_SPc 21..242 CDD:238113 81/252 (32%)

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