Sequence 1: | NP_113713.1 | Gene: | Pdgfrb / 24629 | RGDID: | 3285 | Length: | 1097 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_651349.1 | Gene: | Cad96Ca / 43026 | FlyBaseID: | FBgn0022800 | Length: | 773 | Species: | Drosophila melanogaster |
Alignment Length: | 947 | Identity: | 219/947 - (23%) |
---|---|---|---|
Similarity: | 333/947 - (35%) | Gaps: | 336/947 - (35%) |
- Green bases have known domain annotations that are detailed below.
Rat 101 YNNSLGPELSERKRIY--------------IFVPDPTMGFLPMDSEDLFIFVTDVTETTIPCRVT 151
Rat 152 DPQLEVTLHEKKVDIPLHVPY--DHQRGFIG-----------------TFEDKTYICKTTI---- 193
Rat 194 -GDREVDSDTYYVYSLQVSSINVSVNAVQTVVRQGESITIRCIVMGNDVVNFQWTYPRMKSGRLV 257
Rat 258 EPV-TDYLFGVPSRIGSILHIPTAELSDSGTYTCNVSVSVNDHGDEKAINVTVIENGYVRLLETL 321
Rat 322 EDVQIAELHRSRTLQVVFEAYPTPSVLWFKDNRTLGDSSAGELVLSTRNVSETRYVSELTLVRVK 386
Rat 387 -------VSEAGYYTMRAFHADDQVQLSFKLQVNVPVRVLELSESHPANGEQILRCRGRGMPQPN 444
Rat 445 VTWSTCRDLKRCPRKLSPTPLGNSSKEESQLETNVTFWEEDQEYEVVSTLRLRHVDQPLSVRCML 509
Rat 510 QNSMGRDSQEVTVVPHSLPFKVVVISAILALVVLTVISLIILIMLWQRKPRYEIRWKVIES---- 570
Rat 571 --VSSDGHEYIYVDPVQLPYDST----------------------------------WELPRDQL 599
Rat 600 VLGRTLGSGAFGQVVEATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVV 664
Rat 665 NLLGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQRHSNKHCPPSTELYSNALPVGLSLPSHL 729
Rat 730 NLTGESDGGYMDMSKDESVDYVPMLDMKGHIKYADIESSSYMAPYDNYVPSAPERTYRATLINDS 794
Rat 795 PVLSYTDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISK 859
Rat 860 GSTFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNDQFYNAIKRGYRMAQ 924
Rat 925 PAHASDEIYEIMQKCWEEKFETRPPFSQLVLLLERLL 961 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Pdgfrb | NP_113713.1 | ig | 36..113 | CDD:395002 | 3/11 (27%) |
Ig strand B | 49..53 | CDD:409353 | |||
Ig strand C | 59..62 | CDD:409353 | |||
Ig strand E | 82..86 | CDD:409353 | |||
Ig strand F | 96..101 | CDD:409353 | 219/947 (23%) | ||
Ig | 211..309 | CDD:416386 | 20/98 (20%) | ||
Ig strand A | 211..215 | CDD:409353 | 1/3 (33%) | ||
Ig strand A' | 222..226 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 228..237 | CDD:409353 | 1/8 (13%) | ||
Ig strand C | 242..247 | CDD:409353 | 0/4 (0%) | ||
Ig strand C' | 250..252 | CDD:409353 | 0/1 (0%) | ||
Ig strand D | 256..264 | CDD:409353 | 2/8 (25%) | ||
Ig strand E | 270..277 | CDD:409353 | 1/6 (17%) | ||
Ig strand F | 287..293 | CDD:409353 | 0/5 (0%) | ||
Ig strand G | 298..304 | CDD:409353 | 2/5 (40%) | ||
Ig | 313..414 | CDD:416386 | 18/107 (17%) | ||
PKc_like | 561..952 | CDD:419665 | 131/430 (30%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1016..1097 | ||||
Cad96Ca | NP_651349.1 | Cadherin_repeat | 65..164 | CDD:206637 | 17/118 (14%) |
STYKc | 470..741 | CDD:214568 | 120/357 (34%) | ||
PTKc | 474..742 | CDD:270623 | 119/354 (34%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR24416 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |