DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdgfrb and Cad96Ca

DIOPT Version :9

Sequence 1:NP_113713.1 Gene:Pdgfrb / 24629 RGDID:3285 Length:1097 Species:Rattus norvegicus
Sequence 2:NP_651349.1 Gene:Cad96Ca / 43026 FlyBaseID:FBgn0022800 Length:773 Species:Drosophila melanogaster


Alignment Length:947 Identity:219/947 - (23%)
Similarity:333/947 - (35%) Gaps:336/947 - (35%)


- Green bases have known domain annotations that are detailed below.


  Rat   101 YNNSLGPELSERKRIY--------------IFVPDPTMGFLPMDSEDLFIFVTDVTETTIPCRVT 151
            :|.:..|.|..|:|.:              :...||       |.:||...:             
  Fly    49 HNQNAPPILYVRERNWRISETEKVGQIIDRVRAEDP-------DGDDLIFGI------------- 93

  Rat   152 DPQLEVTLHEKKVDIPLHVPY--DHQRGFIG-----------------TFEDKTYICKTTI---- 193
            :|:..:...|.....|..:|:  |.:.|.:.                 |..|.:|..|..:    
  Fly    94 EPRFSLPGGENDASPPEKIPFQIDRETGVVTLNESLAGRAGQNFLIYITVTDGSYTAKNEVFINI 158

  Rat   194 -GDREVDSDTYYVYSLQVSSINVSVNAVQTVVRQGESITIRCIVMGNDVVNFQWTYPRMKSGRLV 257
             |:||..|.    |..|.|..||..|..|.:.|..:...::.|..|         .|..:.|...
  Fly   159 LGERENSSG----YRPQTSISNVVHNISQFLPRFDQLPGVQSIRNG---------LPNSRPGGWY 210

  Rat   258 EPV-TDYLFGVPSRIGSILHIPTAELSDSGTYTCNVSVSVNDHGDEKAINVTVIENGYVRLLETL 321
            .|| .:.:|| |...|:....|...:.         .|.....|:|:..:..|.....||:..|.
  Fly   211 PPVPQNNIFG-PPPFGNNYPPPPPNIP---------GVRGEQSGEEEQPDEEVTPTTPVRISSTT 265

  Rat   322 EDVQIAELHRSRTLQVVFEAYPTPSVLWFKDNRTLGDSSAGELVLSTRNVSETRYVSELTLVRVK 386
            .        :|||......|          :|.|..:|:......:..........|.:|:..:|
  Fly   266 P--------KSRTKLTPITA----------NNSTRVESAIPAETTTPSGGHHNNSSSPITIFSLK 312

  Rat   387 -------VSEAGYYTMRAFHADDQVQLSFKLQVNVPVRVLELSESHPANGEQILRCRGRGMPQPN 444
                   |:..|::...|      |.|::                         .||.|      
  Fly   313 SGTIPIVVTVGGFFVAIA------VLLAY-------------------------LCRRR------ 340

  Rat   445 VTWSTCRDLKRCPRKLSPTPLGNSSKEESQLETNVTFWEEDQEYEVVSTLRLRHVDQPLSVRCML 509
             ..:..|.||:...|.......|    :|||.:.:|   :|....:|                 :
  Fly   341 -LCAISRTLKKTKEKEELAKKSN----QSQLSSTLT---DDSRNSMV-----------------M 380

  Rat   510 QNSMGRDSQEVTVVPHSLPFKVVVISAILALVVLTVISLIILIMLWQRKPRYEIRWKVIES---- 570
            |...|..:.....||                              |:|..:..|....:.:    
  Fly   381 QQWQGPVAFANRYVP------------------------------WERDQQMGIATSQLSTGVTN 415

  Rat   571 --VSSDGHEYIYVDPVQLPYDST----------------------------------WELPRDQL 599
              |||.|          :|...|                                  ||.||.:|
  Fly   416 GGVSSPG----------VPSPGTGEPGSNLGPGCLTGGAGSSGAPENAFAGEANCDRWEFPRYRL 470

  Rat   600 VLGRTLGSGAFGQVVEATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVV 664
            .....||.||||||....|..::.::....||||.||.:|...:::.|:|||::|..|.||:|||
  Fly   471 KFFNILGEGAFGQVWRCEATNINGNEGITTVAVKTLKESATEVDRKDLLSELEVMKSLEPHINVV 535

  Rat   665 NLLGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQRHSNKHCPPSTELYSNALPVGLSLPSHL 729
            :|||.||...|.::|.||...|.|..||..::   .:||           |.|         :| 
  Fly   536 HLLGCCTDKDPTFVILEYVNRGKLQTYLRSSR---AERH-----------YGN---------TH- 576

  Rat   730 NLTGESDGGYMDMSKDESVDYVPMLDMKGHIKYADIESSSYMAPYDNYVPSAPERTYRATLINDS 794
               |:|:                                                          
  Fly   577 ---GKSN---------------------------------------------------------- 580

  Rat   795 PVLSYTDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISK 859
             ||:..||..|.||||.||::|.|:..:||||||||:||.:....|:.|||.|||::....|..|
  Fly   581 -VLTSCDLTSFMYQVAKGMDYLTSRGIIHRDLAARNILITDDHTCKVADFGFARDVITSKIYERK 644

  Rat   860 GSTFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNDQFYNAIKRGYRMAQ 924
            ....||::|||.||:::::::..||:||||||:|||.|||.||||.:...| ....::.|||:.:
  Fly   645 SEGKLPIRWMATESLYDNIFSVKSDIWSFGILMWEIVTLGSTPYPGISAAD-VMRKVRDGYRLEK 708

  Rat   925 PAHASDEIYEIMQKCWEEKFETRPPFSQLVLLLERLL 961
            |.|...|:|.||..||....:.||.|::::.:|::||
  Fly   709 PEHCRRELYNIMYYCWSHDPQERPLFAEIIQMLDKLL 745

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdgfrbNP_113713.1 ig 36..113 CDD:395002 3/11 (27%)
Ig strand B 49..53 CDD:409353
Ig strand C 59..62 CDD:409353
Ig strand E 82..86 CDD:409353
Ig strand F 96..101 CDD:409353 219/947 (23%)
Ig 211..309 CDD:416386 20/98 (20%)
Ig strand A 211..215 CDD:409353 1/3 (33%)
Ig strand A' 222..226 CDD:409353 0/3 (0%)
Ig strand B 228..237 CDD:409353 1/8 (13%)
Ig strand C 242..247 CDD:409353 0/4 (0%)
Ig strand C' 250..252 CDD:409353 0/1 (0%)
Ig strand D 256..264 CDD:409353 2/8 (25%)
Ig strand E 270..277 CDD:409353 1/6 (17%)
Ig strand F 287..293 CDD:409353 0/5 (0%)
Ig strand G 298..304 CDD:409353 2/5 (40%)
Ig 313..414 CDD:416386 18/107 (17%)
PKc_like 561..952 CDD:419665 131/430 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1016..1097
Cad96CaNP_651349.1 Cadherin_repeat 65..164 CDD:206637 17/118 (14%)
STYKc 470..741 CDD:214568 120/357 (34%)
PTKc 474..742 CDD:270623 119/354 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24416
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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