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Protein Alignment Ivd and Arc42

DIOPT Version :9

Sequence 1:	NP_036724.1	Gene:	Ivd / 24513	RGDID:	2936	Length:	424	Species:	Rattus norvegicus
Sequence 2:	NP_650840.1	Gene:	Arc42 / 42364	FlyBaseID:	FBgn0038742	Length:	405	Species:	Drosophila melanogaster

Alignment Length:	378	Identity:	149/378 - (39%)
Similarity:	220/378 - (58%)	Gaps:	8/378 - (2%)

- Green bases have known domain annotations that are detailed below.

  Rat    40 INGLNEEQKQLRHTISKFVQENLAPKAQEIDQSNDF--KNLREFWKQLGSLGVLGITAPVQYGGS 102
            ::.|:|..:.|:.:...|....|:..|.:.|:.:.:  |.:|    |:|.|||:.:..|.:.||:
  Fly    24 LSALSETHQMLQKSCRDFANNELSGNAAKFDREHLYPEKQIR----QMGELGVMAVAIPEELGGT 84

  Rat   103 GLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGALAMSE 167
            ||.|:.:.:.||||||..|:.|:....:::|.:..::..||:|||:.|:....:||.:|..|:||
  Fly    85 GLDYVAYAIAMEEISRGCASAGVIMSVNNSLYLGPLLSFGNDAQKKDYITPFTTGERVGCFALSE 149

  Rat   168 PNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDLTAVPASRGITAFIVEKDM 232
            |..|||..:....|..||||:||||.|.||||..:|:..:|:|.|:...  ..:||:||||.|..
  Fly   150 PGNGSDAGAASTIATDKGDHFVLNGTKAWITNAFEAEAAIVFATTNKQL--KHKGISAFIVPKAT 212

  Rat   233 PGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANILSQESKGVYVLMSGLDLERLVLAGGPLGIMQ 297
            .|||..||.||||:|||:||:|:||||.||..|:|.:...|..:.|..||..|:.:||..|||.|
  Fly   213 KGFSLGKKEDKLGIRGSSTCQLIFEDCVVPKENMLGEPGFGFKIAMQTLDAGRIGIAGQALGIGQ 277

  Rat   298 AVLDHTIPYLHVREAFGQKIGQFQLMQGKMADMYTRLMACRQYVYNVARACDEGHITAKDCAGVI 362
            |.|:..:.|...|:|||:.|.:.|.:|.|:|||...:.:.|...:..|...|:.....|:.|...
  Fly   278 AALELAVDYAQKRQAFGKPIAKLQSIQQKIADMSLAMESARLLTWRAAWLKDQKQPYTKEAAMAK 342

  Rat   363 LYTAECATQVALDGIQCLGGNGYINDFPMGRFLRDAKLYEIGGGTSEVRRLVI 415
            |..:|.||..:...||.|||.||:.|....|..|||::.||..||||::||||
  Fly   343 LAASEAATLCSHQCIQILGGMGYVTDMAAERHYRDARITEIYEGTSEIQRLVI 395

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.