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Protein Alignment Ivd and Mcad

DIOPT Version :9

Sequence 1:	NP_036724.1	Gene:	Ivd / 24513	RGDID:	2936	Length:	424	Species:	Rattus norvegicus
Sequence 2:	NP_648149.1	Gene:	Mcad / 38864	FlyBaseID:	FBgn0035811	Length:	419	Species:	Drosophila melanogaster

Alignment Length:	389	Identity:	134/389 - (34%)
Similarity:	208/389 - (53%)	Gaps:	22/389 - (5%)

- Green bases have known domain annotations that are detailed below.

  Rat    41 NG----LNEEQKQLRHTISKFVQENLAPKAQEIDQSNDFKNLREFW---KQLGSLGVLGITAPVQ 98
            ||    |.|:|.||:....||.:|.:.|.|.:.|:|.::.     |   |:...||::....|..
  Fly    31 NGTSFALTEDQLQLQELARKFTREEIIPVAAQYDKSGEYP-----WPIIKKAWELGLMNNHIPAD 90

  Rat    99 YGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGAL 163
            .||..|......|..||::.....:..:..| |.|....::.:||:.||:|||.:|:....:.|.
  Fly    91 IGGLDLDVFTTCLSAEELAYGCTGIMTALEA-SGLGQTPVILSGNKEQKKKYLGRLLEEPLVAAY 154

  Rat   164 AMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDL-TAVPASRGITAFI 227
            .::||.|||||..::.:||||||.:|:||.|.|||||..|:...|.|:|:. ...|.|:..|.||
  Fly   155 CVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMWITNGGVANWYFVLARTNPDPKCPPSKAFTGFI 219

  Rat   228 VEKDMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANILSQESKGVYVLMSGLDLERLVLAGGP 292
            ||:|.||.:..:|...:|.|.|:|..:.|||.:||..|:|..|..|..:.|...|..|..:|.|.
  Fly   220 VERDSPGLTPGRKELNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGA 284

  Rat   293 LGIMQAVLDHTIPYLHVREAFGQKIGQFQLMQGKMADM----YTRLMACRQYVYNVARACDEGHI 353
            :|:.|..||..:.|...|:.||..|...|.:|..:|||    .|..:|.|...:.:    |:|..
  Fly   285 VGLAQRCLDEALKYALERKTFGVPIAYHQAVQFMLADMAIGVETSRLAWRLSAWEI----DQGRR 345

  Rat   354 TAKDCAGVILYTAECATQVALDGIQCLGGNGYINDFPMGRFLRDAKLYEIGGGTSEVRRLVIGR 417
            .:...:....:.|:.|.::|.|.:|..||||:.:::|:.:.:||||:|:|..|||:::||:|.|
  Fly   346 NSYYASIAKCHAADMANKIASDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISR 409

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.