DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxc4 and ftz

DIOPT Version :9

Sequence 1:NP_001103354.1 Gene:Hoxc4 / 24459 RGDID:1586210 Length:264 Species:Rattus norvegicus
Sequence 2:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster


Alignment Length:362 Identity:106/362 - (29%)
Similarity:134/362 - (37%) Gaps:132/362 - (36%)


- Green bases have known domain annotations that are detailed below.


  Rat     6 YLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPP-----PPPRPSYPER 65
            |...|||  ..:.|.|.||::.|       ||....:...|     ..||     |||:.:..:.
  Fly    41 YQNTSNY--QGYYPQESYSESCY-------YYNNQEQVTTQ-----TVPPVQPTTPPPKATKRKA 91

  Rat    66 QYSCTSL-----QGPGNSRA--HGPAQAGHHHPE---------KSQP------LCEPAP------ 102
            :....|:     :.|...||  ..|.:...:.|:         |..|      ...|||      
  Fly    92 EDDAASIIAAVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAPSYDQEY 156

  Rat   103 ---------------------------LSGASASPSPAPPACSQP---------APDHPSSAASK 131
                                       .:|..|:|.|..|....|         :|...||:|..
  Fly   157 VTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLPPLEGISTPPQSPGEKSSSAVS 221

  Rat   132 QPIVYPWMKKIHVSTVNPNYNGG---------------EPKRSRTAYTRQQVLELEKEFHYNRYL 181
            |.|       .|.....||..|.               :.||:|..|||.|.||||||||:|||:
  Fly   222 QEI-------NHRIVTAPNGAGDFNWSHIEETLASDCKDSKRTRQTYTRYQTLELEKEFHFNRYI 279

  Rat   182 TRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTK-------VRSAPPAGA-------AP 232
            ||||||:||::|.||||||||||||||||.|||..|.::.       ....||..|       ||
  Fly   280 TRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSPEHCGAGYTAMLPPLEATSTATTGAP 344

  Rat   233 ST---------LSAATPGTSEDHSQS----ATPPEQQ 256
            |.         .:||.|..|..||..    ...|:||
  Fly   345 SVPVPMYHHHQTTAAYPAYSHSHSHGYGLLNDYPQQQ 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxc4NP_001103354.1 Homeobox 159..213 CDD:395001 41/53 (77%)
ftzNP_477498.1 FTZ 1..248 CDD:281812 44/227 (19%)
Homeobox 257..310 CDD:278475 41/52 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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