DRSC/TRiP Functional Genomics Resources

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Protein Alignment FRK and shd1

DIOPT Version :10

Sequence 1:NP_002022.1 Gene:FRK / 2444 HGNCID:3955 Length:505 Species:Homo sapiens
Sequence 2:NP_594213.1 Gene:shd1 / 2542338 PomBaseID:SPAC16E8.01 Length:1420 Species:Schizosaccharomyces pombe


Alignment Length:250 Identity:51/250 - (20%)
Similarity:88/250 - (35%) Gaps:85/250 - (34%)


- Green bases have known domain annotations that are detailed below.


Human    24 DKSTVIENPGALCSPQSQRHGHYFVALFDYQARTAEDLSFRAGDKLQVL-DTLHEGWWFARHLEK 87
            |:|...|:.....|...|:.|   ..|:|:.|..|::|:.:|..::.:: ||....||     :.
pombe   493 DRSARAEDHKPKDSSAGQKMG---TVLYDFIAEAADELTVKANMRVVIVNDTASSDWW-----KC 549

Human    88 RRDGSSQQLQGYIPSNYVAEDRSLQAEPWFFGAIGRSDAEKQLLYSENKTGSFLIRES------- 145
            ..||.    :|.:|||::..|.             ..||:.....|::..||.|.|.:       
pombe   550 SVDGK----EGVVPSNFIKPDT-------------EGDAKSPPSSSKSGQGSSLSRRASKHESKH 597

Human   146 ------------------ESQKGE------------------FSLSVLDGAVVKHYRIKRLDEGG 174
                              ||:..|                  .|:|..|.:.::.:    .|..|
pombe   598 KRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKRSRSHSVSKPDSSKLRTW----TDRTG 658

Human   175 FFLTRRRIFSTLNEFVSHYTKTSDGLCVKLGKPCLKIQVPAPFDLSYKTVDQWEI 229
            .|..........::.: |..||:.          :||.||:. .:|||.:|..|:
pombe   659 AFKVEAEFLGYSDDKI-HLHKTNG----------VKISVPSA-KMSYKDLDYVEL 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FRKNP_002022.1 SH3_Src_like 47..104 CDD:212779 15/57 (26%)
SH2_Src_Frk 112..207 CDD:199831 19/137 (14%)
PTKc_Frk_like 225..494 CDD:270653 2/4 (50%)
shd1NP_594213.1 SH3_Sla1p_1 9..75 CDD:212707
SH3_Sla1p_2 84..134 CDD:212708
SH3_Sla1p_3 511..565 CDD:212709 17/65 (26%)
SHD1 641..706 CDD:427630 18/76 (24%)
SAM_SLA1_fungal 796..857 CDD:188931
PRK10263 <918..>1068 CDD:236669
Med15 1004..>1407 CDD:312941
DUF1720 1044..1117 CDD:369766
DUF1720 1140..1221 CDD:369766
Blue background indicates that the domain is not in the aligned region.

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