DRSC/TRiP Functional Genomics Resources

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Protein Alignment FRK and lsb1

DIOPT Version :10

Sequence 1:NP_002022.1 Gene:FRK / 2444 HGNCID:3955 Length:505 Species:Homo sapiens
Sequence 2:NP_595286.1 Gene:lsb1 / 2539945 PomBaseID:SPBC119.05C Length:296 Species:Schizosaccharomyces pombe


Alignment Length:111 Identity:30/111 - (27%)
Similarity:52/111 - (46%) Gaps:18/111 - (16%)


- Green bases have known domain annotations that are detailed below.


Human    14 PYLPCLSTEADKSTVIENPGALCSPQS-------QRHGHYFVALFDYQARTAEDLSFRAGDKLQV 71
            |.:|....:::.|:|..:...|..|.|       .::....:|::|:....|.||.|.||:.:.|
pombe   105 PGVPAPQKQSEASSVNSSTEKLPPPPSYPGPNTAHKNVERVLAMYDFPGPDAGDLGFHAGEVIIV 169

Human    72 LDTLHEGWWFARHLEKRRDGSSQQLQGYIPSNYV--AEDRSLQAEP 115
            |:.::..||         .|.....:|..|||||  .||.:::|:|
pombe   170 LEHVNNDWW---------RGELNGKEGIFPSNYVRLLEDSAVKAQP 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FRKNP_002022.1 SH3_Src_like 47..104 CDD:212779 16/56 (29%)
SH2_Src_Frk 112..207 CDD:199831 2/4 (50%)
PTKc_Frk_like 225..494 CDD:270653
lsb1NP_595286.1 SH3 142..195 CDD:214620 18/61 (30%)
Blue background indicates that the domain is not in the aligned region.

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