DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grin1 and Ir8a

DIOPT Version :9

Sequence 1:NP_001257531.1 Gene:Grin1 / 24408 RGDID:2736 Length:959 Species:Rattus norvegicus
Sequence 2:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster


Alignment Length:912 Identity:195/912 - (21%)
Similarity:340/912 - (37%) Gaps:272/912 - (29%)


- Green bases have known domain annotations that are detailed below.


  Rat   217 QFDPGTKNVTALLMEARELEA---------RVIILSASED--------DAATVYRAAAMLNMT-- 262
            :||      |.:.|..:||:|         ..:.|:.|||        :..:...|:|::::|  
  Fly    33 EFD------TDIAMVLKELDALRLDVKVDDTTLTLTRSEDGLDMQRFCEILSTVGASAVIDLTYS 91

  Rat   263 ------------GSGYVWLVGER------EISGNALRYAPDGIIGLQLINGKNESAHISDAVGVV 309
                        |.|||.|  ||      ::.|:.:|......:.:..:|.:       |||..:
  Fly    92 HWEEGYNLVRSLGIGYVRL--ERIMRPFLDMFGDFMRQKRANNVAMVFMNAR-------DAVEAM 147

  Rat   310 AQAV-----HELLEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVE--------- 360
            .|.:     ..|:...:.|||.:..:......:..|.:..:...:...:|:..:|:         
  Fly   148 QQMLVGYPFRTLIMDASQTDPGQHFLERIRSLRPAPTYIALFARAAAMNGIFEKVQKADLFQRPL 212

  Rat   361 -----FNEDGDRKFANY-----------------------------SIMNLQNRKLVQV--GIYN 389
                 |.:..||.| .|                             |...:|...|:.|  .:.|
  Fly   213 EWHFVFLDTRDRVF-KYRRQAELCTRFTLNPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLIN 276

  Rat   390 GTHVIP-------NDRKIIWPGGETEKPRGYQMSTRLKIVTIHQEPFV-YVKP------------ 434
            ...|.|       .|........|...|........|.:|  |...|: |..|            
  Fly   277 AAQVSPGYPLAIYQDCNATASSSEVSDPLEKDDYNWLDMV--HWSNFLAYAPPLPHIQDQFQSPV 339

  Rat   435 -------TMSDGTCKEEFTVNGD------------------PVKKVICTGPNDTSPGS------- 467
                   .:|.|....|.....|                  |.::....|..::.|.|       
  Fly   340 PGLTFAVNISAGYYSSEHEAKTDLAAWSSVGEMRLLNETISPARRFFRIGTAESIPWSYLRREEG 404

  Rat   468 ------PRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGEL 526
                  .|..:| ...|:|||.:|:|::.:||.:|:.....|..|....:.     ||:|::|:|
  Fly   405 TGELIRDRSGLP-IWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNELG-----EWDGVVGDL 463

  Rat   527 LSGQADMIVAPLTINNERAQYIEFSKPFKYQ-GLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLS 590
            :.|:.|..:|.|.:.:||.:.|:|..|:..| |::|.::|.:.|::|..||...:..:||.:..:
  Fly   464 VRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEVWLSIVAA 528

  Rat   591 VHVVAVMLYLLDRFSPFGRFKVNSEEEEEDA-------LTLSSAMWFSWGVLLNSGIGEGAPRSF 648
            :...|:|::.:|::||:      |......|       .||..:.||:.......|.|| ||::.
  Fly   529 LVGTAIMIWFMDKYSPY------SSRNNRQAYPYACREFTLRESFWFALTSFTPQGGGE-APKAI 586

  Rat   649 SARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIY 713
            |.|:|...:..|.::::|::||||||||.::|.:..:..:.  :|...| :..|..||.|....|
  Fly   587 SGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLE--QLARQS-RINYTVVKDSDTHQY 648

  Rat   714 F-RRQVELSTMYRHME--------------------KHNYESAAEAI---QAVRD---------- 744
            | ..:....|:||..:                    |..|.....||   |.|.|          
  Fly   649 FVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDA 713

  Rat   745 --NKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFME 807
              |..:|||.|||.:::|.::.|:|...||:|....:.:.:::.|.....:|.:||:..::.|.|
  Fly   714 HENADYAFIHDSAEIKYEITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFE 778

  Rat   808 DLD-KTWVRYQECDSRSNAP--------ATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKD 863
            :|. |.|       ::||.|        ..:|.|::.|||:....|:|..:..:.:|:.|     
  Fly   779 ELKAKYW-------NQSNLPNCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLY----- 831

  Rat   864 ARRKQMQLAFAAV-------------------------NVWRKNL--QDRKSGRAEPDPK-KKAT 900
            .::||..|....|                         ..|...:  .:.|..:..|.|. :.||
  Fly   832 YKKKQNALEITQVRPVNDSSGSGGNSSTAPPTATSTTKQAWHIPVLEAEEKPAKVSPPPSFETAT 896

  Rat   901 FR 902
            ||
  Fly   897 FR 898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Grin1NP_001257531.1 PBP1_iGluR_NMDA_NR1 25..404 CDD:380602 48/280 (17%)
PBP2_iGluR_NMDA_Nr1 416..820 CDD:270437 121/499 (24%)
CaM_bdg_C0 856..884 CDD:402271 6/54 (11%)
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 110/425 (26%)
Lig_chan 520..818 CDD:278489 80/314 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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