Sequence 1: | NP_036704.1 | Gene: | Grik4 / 24406 | RGDID: | 2734 | Length: | 956 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_608557.4 | Gene: | GluRIIC / 33275 | FlyBaseID: | FBgn0046113 | Length: | 940 | Species: | Drosophila melanogaster |
Alignment Length: | 964 | Identity: | 263/964 - (27%) |
---|---|---|---|
Similarity: | 438/964 - (45%) | Gaps: | 104/964 - (10%) |
- Green bases have known domain annotations that are detailed below.
Rat 8 LVLLPAWLLMVACSPHSLRI---AAILDDPMECSRGERLSITLAKNRINRAPERLGKAKVEVDIF 69
Rat 70 ELLR-----DSEYETAETMCQILPKGVVAVLGPSSSPASSSIISNICGEKEVPH--FKVAPEEFV 127
Rat 128 RFQLQRFTTLNLHPSNTDISVAVAGILNFFNCTTACLI--CAKAECLLNLEKLLRQFLISKDTLS 190
Rat 191 VRMLDDTRDPTPLLKEIRDDKTATIIIHANASMSHTILLKAAELGMVSAYYTYIFTNLEFSLQRM 255
Rat 256 DSLVDDR----VNILGFSIF-NQSHAFFQEFSQSLNQSWQENCDHVPFTGPALSSALLFDAVYAV 315
Rat 316 VTAVQELNRS------QEIGVKPLSCGSA----QIWQHGTSLMNYLRMVELEGLTGHIEFNSKGQ 370
Rat 371 RSNYALKILQFTRNGFR---QIGQWHVAEGLSM---DSRLYASNIS-DSLFNTTLV--VTTILEN 426
Rat 427 PYLMLKGNHQDME--GNDRYEGFCVDMLKELAEILRFNYKIRLVGDGVYG-VPEANGTWTGMVGE 488
Rat 489 LIARKADLAVAGLTITAEREKVIDFSKPFMTLGISIL-YR-VHMGRRPGYFSFLDPFSPGVWLFM 551
Rat 552 LLAYLAVSCVLFLVARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAPRAL 616
Rat 617 STRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESVDDLADQTAIEYGTIHGGSSMTFFQN 681
Rat 682 SRYQTYQRMWNYMYSKQPSVFVKSTEEGIARVLNS--NYAFLLESTMNEYYRQRNCNLTQIGGLL 744
Rat 745 DTKGYGIGMPVGSVFRDEFDLAILQLQENNRLEILKRKWWE--GGKCPKEEDHRA-KGLGMENIG 806
Rat 807 GIFVVLICGLIVAIFMAMLEFLWTLRHSEASEVSVCQEMMTELRSIILCQDN------------- 858
Rat 859 --IHPRRRRSGGLPPQPP-----VL----EERR--PRGTATLSNGKLCGAGEPD 899 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Grik4 | NP_036704.1 | Periplasmic_Binding_Protein_type1 | 24..402 | CDD:415822 | 90/410 (22%) |
PBP2_iGluR_kainate_KA1 | 415..785 | CDD:270442 | 133/378 (35%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 931..956 | ||||
GluRIIC | NP_608557.4 | PBP1_iGluR_Kainate | 26..404 | CDD:107377 | 89/406 (22%) |
Periplasmic_Binding_Protein_Type_1 | <279..363 | CDD:299141 | 14/93 (15%) | ||
PBP2_iGluR_Kainate | 423..794 | CDD:270432 | 133/373 (36%) | ||
Lig_chan | 554..828 | CDD:278489 | 100/274 (36%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166349663 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG60082 | |
OrthoDB | 1 | 1.010 | - | - | D60688at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000021 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18966 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 5.960 |