DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik4 and GluRIIC

DIOPT Version :9

Sequence 1:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:964 Identity:263/964 - (27%)
Similarity:438/964 - (45%) Gaps:104/964 - (10%)


- Green bases have known domain annotations that are detailed below.


  Rat     8 LVLLPAWLLMVACSPHSLRI---AAILDDPMECSRGERLSITLAKNRINRAPERLGKAKVEVDIF 69
            |:|...|.....|.....:|   |...||.:|..: |.:::.   |.|| .||    ::..:..:
  Fly     6 LLLGCMWSAFFMCRSRGQQINIGAFFYDDELELEK-EFMTVV---NAIN-GPE----SEQTMRFY 61

  Rat    70 ELLR-----DSEYETAETMCQILPKGVVAVLGPSSSPASSSIISNICGEKEVPH--FKVAPEEFV 127
            .|::     |......|..|.::..||.|:.||||. |:|.|::.:|....:||  |.::.|...
  Fly    62 PLIKRLKPEDGSVTMQEHACDLIDNGVAAIFGPSSK-AASDIVALVCNSTGIPHIEFDISDEGIQ 125

  Rat   128 RFQLQRFTTLNLHPSNTDISVAVAGILNFFNCTTACLI--CAKAECLLNLEKLLRQFLISKDTLS 190
            ..:.....||||:|:...:|.|.|.|:..|......::  ...|.....|:.||:...:..|.:.
  Fly   126 AEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIVYDADDARAAARLQDLLQLREVHNDVVR 190

  Rat   191 VRMLDDTRDPTPLLKEIRDDKTATIIIHANASMSHTILLKAAELGMVSAYYTYIFTNLEFSLQRM 255
            ||......|...:.|.||.::  .:::....:|...:|..:.|.|:...|.....||||.....:
  Fly   191 VRKFHKDDDFRVMWKSIRGER--RVVLDCEPNMLVELLNSSTEFGLTGQYNHIFLTNLETYTDHL 253

  Rat   256 DSLVDDR----VNILGFSIF-NQSHAFFQEFSQSLNQSWQENCDHVPFTGPALSSALLFDAVYAV 315
            :.|..|.    |||....:. |.....:     ||...:....|::.:........|:.|.::..
  Fly   254 EELAADNETFAVNITAARLLVNPDPPPY-----SLPYGYVTQRDNIVYESSDPPRTLIHDLIHDA 313

  Rat   316 VTAVQELNRS------QEIGVKPLSCGSA----QIWQHGTSLMNYLRMVELEGLTGHIEFNSKGQ 370
            :....:..|:      ..:.|..::|..|    :.|..|    .||..: ::|.:|       ..
  Fly   314 LQLFAQSWRNASFFYPDRMVVPRITCDFAASGGRTWAMG----RYLARL-MKGTSG-------VN 366

  Rat   371 RSNYALKILQFTRNGFR---QIGQWHVAEGLSM---DSRLYASNIS-DSLFNTTLV--VTTILEN 426
            .:|:...||||..:|.|   .|..:...:|:.:   |.|...:.:: |......::  |.|.:..
  Fly   367 NTNFRTSILQFDEDGQRITFNIEVYDPLDGIGIAIWDPRGQITQLNVDVKAQKKMIYRVATRIGP 431

  Rat   427 PYLMLKGNHQDME--GNDRYEGFCVDMLKELAEILRFNYKIRLVGDGVYG-VPEANGTWTGMVGE 488
            ||.......:::.  ||..|:|:.||::..:|..:.|.|....|.|..|| :.:....|.|::||
  Fly   432 PYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGE 496

  Rat   489 LIARKADLAVAGLTITAEREKVIDFSKPFMTLGISIL-YR-VHMGRRPGYFSFLDPFSPGVWLFM 551
            :|...|.:.:..||||..|:..:||:.|||.||:||| |: .|:.:.  ..::|.||...||:::
  Fly   497 IINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKT--LDAYLAPFGGEVWIWI 559

  Rat   552 LLAYLAVSCVLFLVARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAPRAL 616
            |::...::.:..:|||::..:|.:||||.:.. .:|.||:.:.|:.|..|...|..|..|.||:.
  Fly   560 LISVFVMTFLKTIVARISKMDWENPHPCNRDP-EVLENQWRIHNTGWLTVASIMTAGCDILPRSP 623

  Rat   617 STRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESVDDLADQTAIEYGTIHGGSSMTFFQN 681
            ..|.....||.|.:||.:|||||||||||..:||..|.::.||:.|..:::|||:|||:.....:
  Fly   624 QVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYGGSTYNLLAD 688

  Rat   682 SRYQTYQRMWNYMYSKQPSVFVKSTEEGIARVLNS--NYAFLLESTMNEYYRQRNCNLTQIGGLL 744
            |....|:..:|.|.:..||.:.|...||:.||..:  :|.||:|:|..||:|::||:|..:|...
  Fly   689 SNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEYHREQNCDLRSVGEKF 753

  Rat   745 DTKGYGIGMPVGSVFRDEFDLAILQLQENNRLEILKRKWWE--GGKCPKEEDHRA-KGLGMENIG 806
            ..|.|.|.:|.|:.:|....:|||:|.|...|..||:|||:  ...|.:|.|..| ..:..|.:.
  Fly   754 GEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKNPNASCFEEPDPDATPDMTFEELR 818

  Rat   807 GIFVVLICGLIVAIFMAMLEFLWTLRHSEASEVSVCQEMMTELRSIILCQDN------------- 858
            |||..|..|:::|..:.:.|||..::.....|....::...:....:||..|             
  Fly   819 GIFYTLYAGILIAFLIGITEFLVYVQQVALEERLTFKDAFKKEIRFVLCVWNNRKPIVAGTPISS 883

  Rat   859 --IHPRRRRSGGLPPQPP-----VL----EERR--PRGTATLSNGKLCGAGEPD 899
              ..|||.....|...|.     |:    ||.|  .:|:.:.|.....|.||.:
  Fly   884 VRTTPRRSLDKSLDRTPKSSRRVVIGRSSEEMREMAQGSGSSSGSNNAGRGEKE 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:415822 90/410 (22%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 133/378 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 89/406 (22%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 14/93 (15%)
PBP2_iGluR_Kainate 423..794 CDD:270432 133/373 (36%)
Lig_chan 554..828 CDD:278489 100/274 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349663
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.960

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