Sequence 1: | NP_036704.1 | Gene: | Grik4 / 24406 | RGDID: | 2734 | Length: | 956 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_727328.1 | Gene: | Ir8a / 31867 | FlyBaseID: | FBgn0052704 | Length: | 936 | Species: | Drosophila melanogaster |
Alignment Length: | 1017 | Identity: | 242/1017 - (23%) |
---|---|---|---|
Similarity: | 405/1017 - (39%) | Gaps: | 252/1017 - (24%) |
- Green bases have known domain annotations that are detailed below.
Rat 11 LPAWLLMVACSPHSLRIAAILDDPMECSRGERLSITLAKNRINRAP---------ERLGKAKVEV 66
Rat 67 DI----FELLRDSEYETAETMCQILPKGVVAVLGPSSSPASSSIIS----------NICGEKEVP 117
Rat 118 HFKVAPEEFVRFQLQRFTTLNLHPSNTDISVAVAGILNFFNCTTACLICAKAECLLNLEKLLRQF 182
Rat 183 LISKDTLSVRMLDDTRDP-TPLLKEIRDDKTAT--IIIHANASMSHTILLKA--AELGMVSAYYT 242
Rat 243 YIFTNLEFSLQRMDSLVDDRVNILGFSIFNQSHAFFQEFSQSLNQSWQENCDHVPF------TGP 301
Rat 302 ALSSALLFDAVYAVVTAV-----------QELN---RSQEIGVKPLSCGSAQIWQHGTSLMNYLR 352
Rat 353 MVELEGLTG------HI--EFNSKGQRSNYALKILQFTRNGFRQIGQWHVAEGLSMDSRLYASNI 409
Rat 410 SDSLFNTTLV-------VTTILENPYLMLKGNH------QDMEGNDRYEGFCVDMLKELAEILRF 461
Rat 462 NYKIRLVGDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVIDFSKPFM-TLGISIL 525
Rat 526 YRVHMGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYS-----PHPCAQGRCN 585
Rat 586 LLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRME 650
Rat 651 VPIESVDDLADQTAIEYGTIHGGSSMTFFQNSRY--QTYQRMWNYM------------------- 694
Rat 695 ----------YSKQPSVFVKSTEEGIARV---LNSNYAFLLESTMNEYYRQRNCNLTQIGGLLDT 746
Rat 747 KGYGIGMPVGSVFRDEFDLAILQLQENNRLEILKRKWWEGG---KCPKEEDHRAKGLGMENIGGI 808
Rat 809 FVVLICGLIVAIFMAMLEFLWTLRHSEASEVSVCQEMMTELRSIILCQDNIHPRRRRSGG----L 869
Rat 870 PPQP----------PVLE-ERRPR--------GTATLSNGKL 892 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Grik4 | NP_036704.1 | Periplasmic_Binding_Protein_type1 | 24..402 | CDD:415822 | 73/433 (17%) |
PBP2_iGluR_kainate_KA1 | 415..785 | CDD:270442 | 126/422 (30%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 931..956 | ||||
Ir8a | NP_727328.1 | PBP2_iGluR_putative | 383..786 | CDD:270435 | 124/415 (30%) |
Lig_chan | 520..818 | CDD:278489 | 92/311 (30%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1052 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000021 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18966 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |