DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik4 and Ir8a

DIOPT Version :9

Sequence 1:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus
Sequence 2:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster


Alignment Length:1017 Identity:242/1017 - (23%)
Similarity:405/1017 - (39%) Gaps:252/1017 - (24%)


- Green bases have known domain annotations that are detailed below.


  Rat    11 LPAWLLMVACSPHSLRIAAILDDPMECSRGERLSITLAKNRINRAP---------ERLGKAKVEV 66
            ||..:|::|     ||.|.          .|.|.||.....:.||.         :.|...:::|
  Fly     3 LPLLVLLLA-----LRFAG----------SEVLKITFWIEPVQRAEFDTDIAMVLKELDALRLDV 52

  Rat    67 DI----FELLRDSEYETAETMCQILPKGVVAVLGPSSSPASSSIIS----------NICGEKEVP 117
            .:    ..|.|..:....:..|:||           |:..:|::|.          |:.....:.
  Fly    53 KVDDTTLTLTRSEDGLDMQRFCEIL-----------STVGASAVIDLTYSHWEEGYNLVRSLGIG 106

  Rat   118 HFKVAPEEFVRFQLQRFTTLNLHPSNTDISVAVAGILNFFNCTTACLICAKAECLLNLEKLLRQF 182
            :.::  |..:|..|..|..........::::.      |.|...|.             :.::|.
  Fly   107 YVRL--ERIMRPFLDMFGDFMRQKRANNVAMV------FMNARDAV-------------EAMQQM 150

  Rat   183 LISKDTLSVRMLDDTRDP-TPLLKEIRDDKTAT--IIIHANASMSHTILLKA--AELGMVSAYYT 242
            |:.....::.|.....|| ...|:.||..:.|.  |.:.|.|:..:.|..|.  |:|......:.
  Fly   151 LVGYPFRTLIMDASQTDPGQHFLERIRSLRPAPTYIALFARAAAMNGIFEKVQKADLFQRPLEWH 215

  Rat   243 YIFTNLEFSLQRMDSLVDDRVNILGFSIFNQSHAFFQEFSQSLNQSWQENCDHVPF------TGP 301
            ::|.:..           |||    |....|:     |.......:.:..|..:|.      :|.
  Fly   216 FVFLDTR-----------DRV----FKYRRQA-----ELCTRFTLNPRAICRSMPMPDLYCGSGF 260

  Rat   302 ALSSALLFDAVYAVVTAV-----------QELN---RSQEIGVKPLSCGSAQIWQHGTSLMNYLR 352
            .:..|:|.:.:.:::.|.           |:.|   .|.|:. .||....          .|:|.
  Fly   261 TMQRAMLLNVLRSLINAAQVSPGYPLAIYQDCNATASSSEVS-DPLEKDD----------YNWLD 314

  Rat   353 MVELEGLTG------HI--EFNSKGQRSNYALKILQFTRNGFRQIGQWHVAEGLSMDSRLYASNI 409
            ||.......      ||  :|.|......:|:.|         ..|.:........|...::|..
  Fly   315 MVHWSNFLAYAPPLPHIQDQFQSPVPGLTFAVNI---------SAGYYSSEHEAKTDLAAWSSVG 370

  Rat   410 SDSLFNTTLV-------VTTILENPYLMLKGNH------QDMEGNDRYEGFCVDMLKELAEILRF 461
            ...|.|.|:.       :.|....|:..|:...      :|..|...:||:|:|.:..|::.|.|
  Fly   371 EMRLLNETISPARRFFRIGTAESIPWSYLRREEGTGELIRDRSGLPIWEGYCIDFIIRLSQKLNF 435

  Rat   462 NYKIRLVGDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVIDFSKPFM-TLGISIL 525
            .::|.....|..|.....|.|.|:||:|:..:.|.|:|.|.:.:|||:||||..|:. ..||||.
  Fly   436 EFEIVAPEVGHMGELNELGEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIA 500

  Rat   526 YRVHMGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYS-----PHPCAQGRCN 585
            .|..: ||...|.|:......|||.::.|.:..:.:::.:.:.:||...:     |:.|      
  Fly   501 IRKPV-RRTSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYSSRNNRQAYPYAC------ 558

  Rat   586 LLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRME 650
               .:::|..|.||.:..|..||...||:|:|.|.:...:|.|.:::::::||||||||||:||:
  Fly   559 ---REFTLRESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQ 620

  Rat   651 VPIESVDDLADQTAIEYGTIHGGSSMTFFQNSRY--QTYQRMWNYM------------------- 694
            .|::|::.||.|:.|.|..:....:..:|.|.::  .|..|||..:                   
  Fly   621 TPVQSLEQLARQSRINYTVVKDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIK 685

  Rat   695 ----------YSKQPSVFVKSTEEGIARV---LNSNYAFLLESTMNEYYRQRNCNLTQIGGLLDT 746
                      .|.||   |...:||.|.|   .|::|||:.:|...:|...||||||::|.:...
  Fly   686 EQYGHILLAINSSQP---VADAKEGFANVDAHENADYAFIHDSAEIKYEITRNCNLTEVGEVFAE 747

  Rat   747 KGYGIGMPVGSVFRDEFDLAILQLQENNRLEILKRKWWEGG---KCPKEEDHRAKGLGMENIGGI 808
            :.|.:.:..||...||...|||:||::...|.||.|:|...   .||..||.  :|:.:|::||:
  Fly   748 QPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNCPLSEDQ--EGITLESLGGV 810

  Rat   809 FVVLICGLIVAIFMAMLEFLWTLRHSEASEVSVCQEMMTELRSIILCQDNIHPRRRRSGG----L 869
            |:..:.||::|:....:|.|:..:...|.|:       |::|.:   .|:     ..|||    .
  Fly   811 FIATLFGLVLAMMTLGMEVLYYKKKQNALEI-------TQVRPV---NDS-----SGSGGNSSTA 860

  Rat   870 PPQP----------PVLE-ERRPR--------GTATLSNGKL 892
            ||..          |||| |.:|.        .|||....||
  Fly   861 PPTATSTTKQAWHIPVLEAEEKPAKVSPPPSFETATFRGKKL 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:415822 73/433 (17%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 126/422 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 124/415 (30%)
Lig_chan 520..818 CDD:278489 92/311 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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