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Protein Alignment Gapdh and Gapdh1

DIOPT Version :9

Sequence 1:	NP_058704.1	Gene:	Gapdh / 24383	RGDID:	2661	Length:	333	Species:	Rattus norvegicus
Sequence 2:	NP_001033936.1	Gene:	Gapdh1 / 35728	FlyBaseID:	FBgn0001091	Length:	332	Species:	Drosophila melanogaster

Alignment Length:	334	Identity:	258/334 - (77%)
Similarity:	293/334 - (87%)	Gaps:	3/334 - (0%)

- Green bases have known domain annotations that are detailed below.

  Rat     1 MVKVGVNGFGRIGRLVTRAAFSCDK-VDIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGK 64
            |.|:|:||||||||||.|||.  || ..:||:||||||:|||||:|::|||||:|.|||.||.|.
  Fly     1 MSKIGINGFGRIGRLVLRAAI--DKGASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEGGF 63

  Rat    65 LVINGKPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMF 129
            ||:||:.||:|.|||||||.|..|||||||||||||||::||..|||||||:|||||||||||||
  Fly    64 LVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMF 128

  Rat   130 VMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLW 194
            |.|||.:.|...:|:||||||||||||||||||:|||.|||||||||||.|||||||||||||||
  Fly   129 VCGVNLDAYSPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLW 193

  Rat   195 RDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKV 259
            |||||||||||||:||||||||||||.|||||||||||||||||||||||.||.|.|.||:||..
  Fly   194 RDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAK 258

  Rat   260 VKQAAEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVD 324
            |::|::||||||||||:::|||.||.|::|||.|||.|||:|||.|||||||||||:||||||:|
  Fly   259 VEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVID 323

  Rat   325 LMAYMASKE 333
            |:.||.||:
  Fly   324 LIKYMQSKD 332

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.