DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrtm4 and Fili

DIOPT Version :9

Sequence 1:NP_001128215.1 Gene:Lrrtm4 / 243499 MGIID:2389180 Length:591 Species:Mus musculus
Sequence 2:NP_001369108.1 Gene:Fili / 5740472 FlyBaseID:FBgn0085397 Length:789 Species:Drosophila melanogaster


Alignment Length:710 Identity:157/710 - (22%)
Similarity:260/710 - (36%) Gaps:204/710 - (28%)


- Green bases have known domain annotations that are detailed below.


Mouse    21 PTLLLVMLT------GAQRACPKNCRCDG----KIVYCESHAFADIPENISGGSQGLSLRFNSIQ 75
            |.|||::||      .....||..|:|.|    ....|...|..|:|..::..::.::|..|.|:
  Fly    22 PVLLLLLLTLVILPPETTAFCPSKCQCLGGEANSRALCVDAALEDVPIQLNPETKYINLTVNRIR 86

Mouse    76 KLK-----------------------SNQFAGLNQLIWLYLDHNYISSVDEDAFQGIRRLKELIL 117
            .|:                       |..|...::|..|.|..|.:||:.:.||:|:..|..|.|
  Fly    87 TLEFSLPFYMKLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLTNLLLLDL 151

Mouse   118 SSNKITYLHNKTFHPVPNLRNLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVP-------- 174
            |.|:|..:|......:.:|..|||:.|.:.:|:...|||:..|.:|..|:|.|..||        
  Fly   152 SFNRIETVHPTALSDLASLVELDLTNNNIVSLEDNCFKGMNTLEVLVFRNNRLLDVPASNLWHLH 216

Mouse   175 --------IRVFQDCRNLDF--------LDLGYNRLRSLSRNAFAGLLKLKELHLEHN------- 216
                    :.:.:..||..|        |.:..|.:..|..:||.||:.||.|.|..|       
  Fly   217 ALKSLDMSLNLVEFVRNDSFEGLKELLALSVQGNVMSELDLSAFEGLISLKHLDLSDNNLTMVPT 281

Mouse   217 -QFSKIN-----------FAHFP-----RLFNLRSIYL-QWNRIRSVSQGLTWTWSSLHTLDLSG 263
             |.||::           |:..|     .||:||.::| :.:.::.:........:.|.||.|:.
  Fly   282 QQLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLRELHLSRLDFLQRIDSRAFVDNTHLQTLHLNN 346

Mouse   264 N-DIQAIEPGTFKCLPNLQKLNLDSNKLTNV--SQETVNAWISLISITLSGNMWECSRSICPLFY 325
            | .:..|....|:..||:.::.:.||.|..:  :|..|:   .|..:.|..|..:|:.|:  |:.
  Fly   347 NPQLSDIPMRLFQGNPNILEVYMQSNSLQTLYSAQFPVD---QLQKLYLGDNPLQCNCSL--LWL 406

Mouse   326 W---LKNFKG------NKESTMICAGPKHIQGEKVSDAVETYNICSDVQVVNTERSHLAPQTPQK 381
            |   ..||:|      :.....:.|..|....|:::|  |...:.|....|....:::|.|....
  Fly   407 WRLVTGNFEGVDPGMEHAAGGAVAALAKEADDEELAD--EATAVASTDDGVAALAAYIAEQHIVN 469

Mouse   382 PPFIPKPTIFK-------------------------PDAVPATLEAVSPSPG-FQIPGTDHEYEH 420
            .....:|:.::                         .|.|....:.::.|.| ...|.      |
  Fly   470 ALHTTEPSAYELATSSSNRNSGILRMDRQQIGCDIWRDKVRTRRKLLTMSEGEITCPA------H 528

Mouse   421 VSFHKIIAGSVALFLSVAMI-LLVIYVSWKRYPASMKQLQQHSLMKRRRKKARESERQMNSPLQE 484
            :   ..:..:|...|.|||| :.|:|  :.|:            :|||||...|     ..|:: 
  Fly   529 I---VTVVCAVITCLLVAMIGISVLY--YLRF------------VKRRRKLLHE-----RGPMR- 570

Mouse   485 YYVDYKPTNSETMDIS---VNGSGP------CTYTISGSRE-------CEIPHHVKPLPYYSYDQ 533
                   |:...:::.   :.|..|      .:.|:.|...       ...|||.:.|       
  Fly   571 -------TSKSIINVHDRILQGHNPGGLGLGMSMTLGGGNHVNGLGMTLNYPHHAQTL------- 621

Mouse   534 PVIGYCQAHQPLHI-----------NKAYEAVSIEQDDSPSLELGRDHSFIATIARSAAP 582
                  |||...|.           |..|:..::.|.|...||.......||...|:..|
  Fly   622 ------QAHHHYHQAMPLQSHGGNGNHEYQQTTLPQLDKLELERYLAAQTIANEYRALKP 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrrtm4NP_001128215.1 leucine-rich repeat 44..62 CDD:275380 4/17 (24%)
leucine-rich repeat 65..87 CDD:275380 6/44 (14%)
LRR_8 87..146 CDD:316378 21/58 (36%)
leucine-rich repeat 88..111 CDD:275380 9/22 (41%)
leucine-rich repeat 112..135 CDD:275380 7/22 (32%)
LRR_8 134..194 CDD:316378 21/83 (25%)
leucine-rich repeat 136..159 CDD:275380 9/22 (41%)
leucine-rich repeat 160..183 CDD:275380 7/38 (18%)
leucine-rich repeat 184..207 CDD:275380 8/30 (27%)
leucine-rich repeat 208..231 CDD:275380 11/46 (24%)
LRR_8 231..290 CDD:316378 14/60 (23%)
leucine-rich repeat 232..255 CDD:275380 3/23 (13%)
leucine-rich repeat 256..279 CDD:275380 7/23 (30%)
leucine-rich repeat 304..316 CDD:275378 3/11 (27%)
FiliNP_001369108.1 leucine-rich repeat 75..97 CDD:275378 4/21 (19%)
leucine-rich repeat 98..121 CDD:275380 2/22 (9%)
LRR_8 120..180 CDD:404697 21/59 (36%)
leucine-rich repeat 122..145 CDD:275380 9/22 (41%)
leucine-rich repeat 146..169 CDD:275380 7/22 (32%)
LRR <161..>354 CDD:227223 46/192 (24%)
leucine-rich repeat 170..193 CDD:275380 9/22 (41%)
leucine-rich repeat 194..217 CDD:275380 7/22 (32%)
leucine-rich repeat 218..265 CDD:275380 10/46 (22%)
leucine-rich repeat 266..289 CDD:275380 8/22 (36%)
leucine-rich repeat 290..313 CDD:275380 3/22 (14%)
leucine-rich repeat 314..338 CDD:275380 3/23 (13%)
LRR_8 337..397 CDD:404697 17/62 (27%)
leucine-rich repeat 339..360 CDD:275380 7/20 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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