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Protein Alignment Cpa1 and CG8560

DIOPT Version :9

Sequence 1:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus
Sequence 2:	NP_001261516.1	Gene:	CG8560 / 38830	FlyBaseID:	FBgn0035781	Length:	418	Species:	Drosophila melanogaster

Alignment Length:	419	Identity:	132/419 - (31%)
Similarity:	216/419 - (51%)	Gaps:	24/419 - (5%)

- Green bases have known domain annotations that are detailed below.

  Rat     1 MKRLLILSLLLEAVC-GNENFVGHQVLRISAADEAQVQKVKELEDLEHLQLDFWRDAARAGIPID 64
            |.:|..:.|||.:|. ..||:.|:::..|:|.:..:.|.:..|...|  ..||: |..|:   :|
  Fly     1 MLKLFAVVLLLASVALAVENYDGYKIYDINARNAFEKQLLLRLSGNE--AYDFF-DLPRS---LD 59

  Rat    65 ----VRVPFPSIQSVKAFLEYHGISYEIMIEDVQLLLDEEK---QQMSAFQARALSTDSFNYATY 122
                |.|.....:..:..||.:|::|.::.|:....|.:|:   |.......|: :..|.::..:
  Fly    60 ASSRVMVKPEDQEGFEHLLEKYGVNYSVINENFGESLRQERDENQNQRLMNLRS-AERSVSFKAF 123

  Rat   123 HTLDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGG--TNRPAIWIDTGIHSREWVT 185
            |...||..::|.|.|.:|..||....|.::|.|.|..:..:.|.  |.:..:::|.|||:|||:.
  Fly   124 HRHAEINAYLDELAAAYPSRVSVQVAGKSYENRDIKTITITNGDGKTGKNVVFLDAGIHAREWIA 188

  Rat   186 QASGVWFAKKITKDYGQDPTFTAVLDNMDIFLEIVTNPDGFAYTHKTNRMWRKTRSHTQGSLCVG 250
            .|..::...::.:::..:   :.:|.:.|..:..|.||||:.|:|.|.|||||||... .|.|.|
  Fly   189 HAGALYVIHQLVENFAAN---SELLKDFDWVILPVVNPDGYEYSHTTTRMWRKTRKPI-SSACYG 249

  Rat   251 VDPNRNWDAGFGMAGASSNPCSETYRGKFPNSEVEVKSIVDFVTS-HGNIKAFISIHSYSQLLLY 314
            .|.|||:|..:|..||||..||:|::|:...||.|.:.|.|.:.| .|..|.::::|||...|||
  Fly   250 TDANRNFDFHWGEVGASSYSCSDTFKGETAFSEPETQLIRDILLSLTGRGKFYLTLHSYGNYLLY 314

  Rat   315 PYGYTSEPAPDQAELDQLAKSAVTALTSLHGTKFKYGSIIDTIYQASGSTIDWTYS-QGIKYSFT 378
            |:|:||.......:.|::|:....|:.|..|||:..||..:.:|.|:|.:.|:.:. .....|.|
  Fly   315 PWGWTSALPSSWRDNDEVAQGGADAIKSATGTKYTVGSSTNVLYAAAGGSDDYAFGVANFPVSIT 379

  Rat   379 FELRDTGLRGFLLPASQIIPTAEETWLAL 407
            .|| ..|..||....|||.....|||:.:
  Fly   380 MEL-PAGGTGFNPSTSQIEGFVSETWVGI 407

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.