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Protein Alignment Cpa1 and CG18417

DIOPT Version :9

Sequence 1:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus
Sequence 2:	NP_648119.1	Gene:	CG18417 / 38829	FlyBaseID:	FBgn0035780	Length:	427	Species:	Drosophila melanogaster

Alignment Length:	445	Identity:	136/445 - (30%)
Similarity:	216/445 - (48%)	Gaps:	56/445 - (12%)

- Green bases have known domain annotations that are detailed below.

  Rat     4 LLILSLL-LEAVCGNEN-FVGHQVLRIS------AADEAQVQKVKELEDLEHLQLDFWRDAARAG 60
            :|.||.| |.|.....| :.|:::..:|      |..||..:.||.....|..      ....||
  Fly     7 ILALSCLSLSAGLQRTNKYEGYKIYEVSSEARSVAFSEALSELVKNASYYEVF------SELNAG 65

  Rat    61 IPIDVRV-PFPSIQSVKAFLEYHGISYEIMIEDVQLLLDEEKQQMSAFQARALSTDSFNY----- 119
            .|..:.| |...:..|: .:|.:.:.|:|:..:|.|.|..:      |:...:....|.|
  Fly    66 NPGKIMVHPHEQVNFVQ-LMEENNVKYDIINRNVGLTLSRQ------FETNRMLRHWFPYNGRLG 123

  Rat   120 -ATYHTLDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGGT--NRPAIWIDTGIHSR 181
             ..|:..:||.:|::.|..|||:.|....:|.::|||.:..:..:.|..  |:..|.:|.|.|:|
  Fly   124 TERYYNHEEINQFIEDLAGEHPRRVFLKTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAR 188

  Rat   182 EWVTQASGVWFAKKITKDYGQDPTFTAVLDNMDIFLEI------VTNPDGFAYTH--KTNRMWRK 238
            ||::.|:..:...::.  |..:       ||.|:.|:.      |.||||:.||.  :..|||||
  Fly   189 EWISPAAATYLINQLV--YNLE-------DNADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRK 244

  Rat   239 TRSHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSETYRGKFPNSEVEVKSIVDFVTSH---GNIK 300
            ||. ...|.|:|.|||||:|..:...|||.:||...|.|..|.||.|...:.|.:.|:   |.:
  Fly   245 TRK-PSSSDCIGTDPNRNFDFHWNEEGASDDPCDNIYAGAKPFSEPEALVVGDLIHSYVDRGQM- 307

  Rat   301 AFISIHSYSQLLLYPYGYTSEPAPDQAELDQLAKSAVTALTSLHGTKFKYGSIIDTI-YQASGST 364
             ::::|||..|:|||:|:|:.....:.:|.::|.:..:|:....||.:|.|....|| |.|||::
  Fly   308 -YLTLHSYGSLILYPWGWTAAVPDTEEDLHEVAAAGQSAIQEATGTIYKIGPSATTINYAASGAS 371

  Rat   365 IDWTYSQGIKYSFTFELRDTGLRGFLLPASQIIPTAEETWLALLTIMDHTV-KHP 418
            .|:.::.|...|||.|| ..|..||..|||.|....:|||:.:..:....: |:|
  Fly   372 DDYAFNAGFPISFTMEL-PFGGTGFDPPASDIDSIVKETWVGIAAMARKVIQKYP 425

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.