DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpa1 and CG8562

DIOPT Version :9

Sequence 1:NP_058694.2 Gene:Cpa1 / 24269 RGDID:2388 Length:419 Species:Rattus norvegicus
Sequence 2:NP_648118.1 Gene:CG8562 / 38828 FlyBaseID:FBgn0035779 Length:424 Species:Drosophila melanogaster


Alignment Length:426 Identity:120/426 - (28%)
Similarity:215/426 - (50%) Gaps:23/426 - (5%)


- Green bases have known domain annotations that are detailed below.


  Rat     4 LLILSLLLEAVCGNENFVGHQVLRI--SAADEAQVQKVKELEDLEHLQLDFWRDAARAGIPIDVR 66
            ||:|.|....|...:::.|:::..:  |.||:|.:     |..|.....||..:....|.|..|.
  Fly     7 LLVLFLGATLVAAEQDYEGYRIYEVIPSTADQADL-----LHQLSLQGYDFISETRLLGHPSRVI 66

  Rat    67 VPFPSIQSVKAFLEYHGISYEIMIEDVQLLLDEE--KQQMSAFQARALSTDSFNYATYHTLDEIY 129
            |....::..:..:|...::..::..::...:.||  ::||....|........:...|:|.:||.
  Fly    67 VSPAQLKHFQQLVEAEKMTLTLVNSNLGASIAEEFAQRQMQRLLAPITGKGRLSTERYYTHEEII 131

  Rat   130 EFMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGG--TNRPAIWIDTGIHSREWVTQASGVWF 192
            .::|.|....|..|....:|.::|.|.:..:..:.|.  .|:..|::|.|.|:|||::.|:.::.
  Fly   132 NYIDDLAQRFPSRVFVKTVGWSYEQRVLKTITITNGDGKANKKVIFMDGGFHAREWISPAAVLYV 196

  Rat   193 AKKITKDYGQDPTFTAVLDNMDIFLEIVTNPDGFAYTHKTN--RMWRKTRS-HT-QGSLCVGVDP 253
            ..::.:.:.::   ..:|.:.|..:..:.|.||:.:|....  |||||||. :| .|..|.|.||
  Fly   197 IDQLVEQFEEN---AHLLKDYDWVILPLVNADGYEHTQTGTLARMWRKTRQPYTYAGQTCYGADP 258

  Rat   254 NRNWDAGFGMAGASSNPCSETYRGKFPNSEVE---VKSIVDFVTSHGNIKAFISIHSYSQLLLYP 315
            |||:|..:...|||||||::||.|....||.|   |:.::..:...|.:  ::::|||...||||
  Fly   259 NRNFDFHWNEEGASSNPCADTYAGPTAFSEPETITVRDLMHSLADRGIM--YLTLHSYGNYLLYP 321

  Rat   316 YGYTSEPAPDQAELDQLAKSAVTALTSLHGTKFKYGSIIDTIYQASGSTIDWTYSQGIKYSFTFE 380
            :|:||:...:..:||.:|::...|:.:..||.:.|||..:.:|.|:|::.|:.|..|...|.|.|
  Fly   322 WGWTSDLPENWEDLDAVARTGAEAIENATGTVYTYGSSTNVLYIAAGASDDYGYYAGFNVSITME 386

  Rat   381 LRDTGLRGFLLPASQIIPTAEETWLALLTIMDHTVK 416
            |...|..||..|.::|.....|||:.:..:.:..::
  Fly   387 LPGAGSIGFNPPVTRIDEFVTETWIGIRAMAEKVIE 422

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Cpa1NP_058694.2 Propep_M14 32..100 CDD:396700 11/67 (16%)
M14_CPA 117..417 CDD:349442 96/309 (31%)
Substrate binding. /evidence=ECO:0000250|UniProtKB:P00730 179..182 1/2 (50%)