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Protein Alignment Cpa1 and CG8563

DIOPT Version :9

Sequence 1:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus
Sequence 2:	NP_001261515.1	Gene:	CG8563 / 38826	FlyBaseID:	FBgn0035777	Length:	440	Species:	Drosophila melanogaster

Alignment Length:	443	Identity:	136/443 - (30%)
Similarity:	201/443 - (45%)	Gaps:	51/443 - (11%)

- Green bases have known domain annotations that are detailed below.

  Rat     7 LSLLLEAVCG---NENFVGHQVLRISAADEAQVQKVKELEDLE--HLQLDFW---RDAARAGIPI 63
            |:|.|..:.|   ..|..|::...............|.:.||:  ..:||||   |:::...:..
  Fly     9 LALCLVGLAGLGIANNLAGYEGYTKYTVQHGDENAFKYMVDLQTNDAELDFWLLTRNSSVLTVSP 73

  Rat    64 DVRVPFPSIQSVKAFLEYHGISYEIM-IEDVQLLLD--------------EEKQQMSAFQA---- 109
            ..:..|      :|.|...|:|||:. :.::...|.              ||.||....||
  Fly    74 RRKTQF------EASLSSLGVSYEMQPLMELMAALQANSSFADDNYDGEYEECQQDECEQAERPR 132

  Rat   110 ---RALSTDSF-NYATYHTLDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGGTNRP 170
               |..:...| :|..||   |:..||..|.|.:||......:|.:.|||.|..|..|.....||
  Fly   133 RRTRRQARGFFSHYPRYH---EVLSFMSGLAARYPQFCRYESLGRSNEGRHIAALSISLNSRVRP 194

  Rat   171 --AIWIDTGIHSREWVTQASGVWFAKKITKDYGQDPTFTAVLDNMDIFLEIVTNPDGFAYTHKTN 233
              ..:|....|.|||:|..:.::.|.::..:.   ..||.||.:::|||..:.||||:.|||.|:
  Fly   195 RRVAYIQAATHGREWITTQTVLYLAYELLSNL---RAFTRVLQDVEIFLVPLVNPDGYEYTHTTD 256

  Rat   234 RMWRKTRSHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSETYRGKFPNSEVEVKSIVDFVTSHGN 298
            |.|||.|....|..|.|||.|||:...:...|||.|.|||.|.|..||||.|..::|.::..:.|
  Fly   257 RFWRKNRHRYAGHSCSGVDINRNFGNHWNYQGASQNLCSEVYSGTAPNSEPETSAVVRYLEFNRN 321

  Rat   299 -IKAFISIHSYSQLLLYPYGYTSEPAPDQ-AELDQLAKSAVTALTSLHGTKFKYGSIIDTIYQAS 361
             :|..:.:||:.:.:.|||||.....|.. ..|..:|..|...:....||::..|:....:|:||
  Fly   322 RVKLSLDVHSFGKFIFYPYGYAKNTVPPTVGTLRSVALRAANQIGRYRGTRYTTGTSASILYEAS 386

  Rat   362 GSTIDWTYSQ-GIKYSFTFELRDTGLRGFLLPASQIIPTAEETWLALLTIMDH 413
            ||..|:.|.. ||..|:|.||...   .|.:||..||...:||:...:..:.|
  Fly   387 GSLDDFAYGNLGIPLSYTLELPGD---EFHVPAHDIIHVCKETFAGFIEFIRH 436

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.