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Protein Alignment Cpa1 and CG3108

DIOPT Version :9

Sequence 1:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus
Sequence 2:	NP_572262.1	Gene:	CG3108 / 31506	FlyBaseID:	FBgn0029807	Length:	1132	Species:	Drosophila melanogaster

Alignment Length:	383	Identity:	131/383 - (34%)
Similarity:	212/383 - (55%)	Gaps:	27/383 - (7%)

- Green bases have known domain annotations that are detailed below.

  Rat    22 GHQVLRISAADEAQVQKVKELEDLEHLQLDFWRDAARAGIPIDVRVPFPSIQSVKAFLEYH---- 82
            |.||.||....:...:...||:.....||  |::       :...|.:.....|.|..|.|
  Fly   725 GAQVWRIVVQTDKDKRMADELQSKYDGQL--WKE-------VKQEVDYLLKPQVLAAAERHIRAA 780

  Rat    83 GISYEIMIEDVQLLLDEEK---QQMSAFQARALSTDSFNYATYHTLDEIYEFMDLLVAEHPQLVS 144
            .:|..::|:::|.::::|.   ::::..|.|  ......:..||.|::|:.|:|.:...:|.:.|
  Fly   781 NLSRIVLIDNLQRVIEKENPPAEKIAELQNR--KGHRLTWQAYHRLEDIHGFIDYMAKTYPDICS 843

  Rat   145 KIQIGNTFEGRPIHVLKFSTGGTNRPAIWIDTGIHSREWVTQASGVWFAKKITKDYGQDPTFTAV 209
            ...||.:.|.||:.:||.|.|....|.||||.|:|:|||::.|:..:.|.::.:.:...|..
  Fly   844 TEIIGYSVEKRPLKILKISNGNARNPGIWIDGGMHAREWISPATVTYIANQLVEGWEDLPEH--- 905

  Rat   210 LDNMDIFLEIVTNPDGFAYTHKTNRMWRKT-RSHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSE 273
            :.:::.::..|.||||:.|:|.|:|:|||. |:|  |..|.|||.|||:...:|..|.|::|||:
  Fly   906 MRSINWYIHPVANPDGYEYSHTTDRLWRKNMRAH--GRQCPGVDLNRNFGYKWGGKGTSASPCSQ 968

  Rat   274 TYRGKFPNSEVEVKSIVDFVTS--HGNIKAFISIHSYSQLLLYPYGYTSEPAPDQAELDQLAKSA 336
            ||||....||.|...|..|::.  ....:|::|.|||.|.:|||:||..:...|:|:||::|:.|
  Fly   969 TYRGSKAFSEPETFYISKFISGFPRETFQAYLSFHSYGQYILYPWGYDYQLTQDRADLDRVARQA 1033

  Rat   337 VTALTSLHGTKFKYGSIIDTIYQASGSTIDWTYS-QGIKYSFTFELRDTGLRGFLLPA 393
            .|::|...|.|:..||...|:|.|:|.:.||... .||||::|.|:.|||..||:|||
  Fly  1034 GTSITKSTGVKYTVGSSATTLYPAAGGSDDWAKGIAGIKYAYTIEMGDTGRYGFVLPA 1091

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.