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Protein Alignment Cpa1 and CG3097

DIOPT Version :9

Sequence 1:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus
Sequence 2:	NP_572259.1	Gene:	CG3097 / 31503	FlyBaseID:	FBgn0029804	Length:	445	Species:	Drosophila melanogaster

Alignment Length:	435	Identity:	134/435 - (30%)
Similarity:	234/435 - (53%)	Gaps:	34/435 - (7%)

- Green bases have known domain annotations that are detailed below.

  Rat     4 LLILSLLLEAVCGN-ENFVGHQVLRISA------ADEAQVQKVKELEDL--------EHLQLDF- 52
            ||.|.||:.||..: .|.:...:..:.|      .||||:.::..:.:.        :.|:..|
  Fly     7 LLQLLLLVAAVAASLANELPSNLTLLDANEIPQRYDEAQLWRIYNISEAMQKRVPVGQMLEQKFG 71

  Rat    53 ---WRDAARAGIPIDVRVPFPSIQSVKAFLEYHGISYEIMIEDVQLLLDEEKQ---QMSAF---- 107
               |::.::.   :|:.:....:::.::||..|.:..:|:..::|.::|||..   |.|:|
  Fly    72 GNIWKENSKF---LDISIARDQLKAARSFLSAHRLDPQILSHNIQSMIDEELLEGIQSSSFGHGR 133

  Rat   108 QARALSTDSFNYATYHTLDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGGTNRPAI 172
            :.:..:..|.::..||.|:.||.||..:..:.|.:|....||.|.|||.:.||:.|........:
  Fly   134 RTKKAARSSMHWKDYHDLETIYSFMREIRTKFPNIVRLYTIGQTAEGRDLKVLRISENPRENKKV 198

  Rat   173 WIDTGIHSREWVTQASGVWFAKKITKDYGQDPTFTAVLDNMDIFLEIVTNPDGFAYTHKTNRMWR 237
            |||.|||:|||::.|:..:...::..|:...|   |.:..:..::..|.||||:.|:..|||:||
  Fly   199 WIDGGIHAREWISPATVTFILYQLMSDWENQP---AHIRGLTWYIMPVMNPDGYEYSRTTNRLWR 260

  Rat   238 KTRSHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSETYRGKFPNSEVEVKSIVDFVTSHG-NIKA 301
            |.||.::.:.|.|||.|||:|.|:...|:|:||||:||||..|.||.|.:::.:|:.... |:::
  Fly   261 KNRSPSRRAQCSGVDLNRNFDIGWNGYGSSTNPCSDTYRGSAPASERETRAVAEFLAKRKYNLES 325

  Rat   302 FISIHSYSQLLLYPYGYTSEPAPDQAELDQLAKSAVTALTSLHGTKFKYGSIIDTIYQASGSTID 366
            :::.|||.|:::||:.|.:....|.:.|.:::..|...:....||.::.....:.:..|.|.:.|
  Fly   326 YLTFHSYGQMIVYPWAYKAVKVKDASVLQRVSSLAAERILQKTGTSYRAAVTHEVLGIAGGGSDD 390

  Rat   367 WTYSQ-GIKYSFTFELRDTGLRGFLLPASQIIPTAEETWLALLTI 410
            |:.:. |:||.:|.||||.|..||:||...|..||.|.|..:.|:
  Fly   391 WSRAALGVKYVYTIELRDRGAYGFVLPPRFIKDTALEGWTVVETV 435

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.