Sequence 1: | XP_006254568.1 | Gene: | Apc / 24205 | RGDID: | 2123 | Length: | 2870 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001263046.1 | Gene: | Apc / 44642 | FlyBaseID: | FBgn0015589 | Length: | 2417 | Species: | Drosophila melanogaster |
Alignment Length: | 2981 | Identity: | 738/2981 - (24%) |
---|---|---|---|
Similarity: | 1084/2981 - (36%) | Gaps: | 1093/2981 - (36%) |
- Green bases have known domain annotations that are detailed below.
Rat 177 IDSLPLTENFSLQTDMTRRQLEYEARQIRAAMEEQLGTCQDMEKRAQRRIARIQQIEKDILRVRQ 241
Rat 242 LLQSQAAEAERSSQSKHETASHEAERQLEGQGVAESNLATSGSGQSSAARVDHETAGVLSSSGTH 306
Rat 307 SAPRRLTSH-----LGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQ 366
Rat 367 LLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEW 431
Rat 432 QEAHEQGM--DQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGRKATRGISPQELGQGL 494
Rat 495 SGGLQAIAELLQVDCEMHG-LTDDHYSVTLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 558
Rat 559 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 623
Rat 624 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 688
Rat 689 QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 753
Rat 754 NLMANRPAKYK----DANIMSPG-SSLPSLHVRKQKALEAELDAQHLSETFDNIDNLSPKASHRS 813
Rat 814 KQRHKQNLYGDYVFDASRHDDNRSDNFNTGNMTVLSPYLNTTVLPSSSSSRGSLDSSRSEKDRSL 878
Rat 879 ERERGIGLSTYHSATENPGTSSKRGLQLSATAAQIAKVMEEVSALHTSQDDRSPASAAELHCVAE 943
Rat 944 ERTAARRSSASHTHPNTHNFAKSESSNRTCSMPYAKVEYKRSSNDSLNSVTSSDGYGKRGQMKPS 1008
Rat 1009 VESYSEDDEGKFCSYGQYPADLAHKIHSANHMDDNGGELDTPINYSLKYSDEQLNSGRQSPSQNE 1073
Rat 1074 RWARPKHVIEDEIKQNEQRQSRSQNTNFPV-YSENTDDKHLKFQ-QHFGQQECVSPYRSRGTNGS 1136
Rat 1137 ETNRMGSSHAVNQNVNQSLCQEDDYEDDKPTNYSERYSEEEQHEEEERPTNYSIK-YNEEKHHVD 1200
Rat 1201 QPIDYSLKYA---TDISSSQKPSFSFSKTPSVQGTKTEHNSPSSEAASAPSSNAKRQSQLHPSSA 1262
Rat 1263 QRNGQTPKGTACKVPSINQETMQTYCVEDTPICFSRCSSLSSLSSAEDEIGCDQTTQEADSANTL 1327
Rat 1328 QIAEIKENDVTRSAQDPASDVPAVSQSTRTKPSRLQASGLASESARHKAVEFSSGAKSPSKSGAQ 1392
Rat 1393 TPKSPPEHYVQETPLVFSRCTSVSSLDSFESRSIA-----SSVQSEPCSGMVSGIVSPSDLPDSP 1452
Rat 1453 GQTMPPSRSKTPPPPPPPQPVQTKREVPKTKVPAAEQREGGPKQTAVSAAVQRVQ----VLPDA- 1512
Rat 1513 --------DTLLHFATESTPDGFSCSSSLSALSL--DEPFIQKDVELRIMPPVQENDNGNE---- 1563
Rat 1564 ---------------------TEPEQPEES-----NENQDKEVEKPDSEKDL-------LDDSD- 1594
Rat 1595 ------------DDDI------------EILEECIISAMPTKSSRKAKKLAQTASKLPPPVA--- 1632
Rat 1633 RKPSQLPVYKLLPSQSRLQAQKHVSFTPGDDVPRVYCVEGTPINFSTATSLSDLTIES----PPN 1693
Rat 1694 ELAAGDGVRASVQSGEFEKRDTIPTEGRSTDEAQRGKVSSIAIPDLDGSKAEEGDILAEC----- 1753
Rat 1754 ---------------------INSALPKGRSHKPFRVKKIMDQVQQASMTSSGTNKNQIDTKKKK 1797
Rat 1798 PTSPVKPMPQNTEYRTRVRKNTDSKVNVNTEETFSDNKDSKKQSLKNNP--KDLNDKLP---DNE 1857
Rat 1858 DRVRGGFTFDSPHHYTPIEGTPYCFSRNDSLSSLDFDDDDVDLSREKAELRKGKESKDSEAKVTC 1922
Rat 1923 HTEPSSSQQSA---------RKA-------QASTKHPVN-----------------RGPSKP--- 1951
Rat 1952 ---LLQEQPTFPQSSKDVPDRGAATDEKLQNFAIEN--------TPVCFS--------------- 1990
Rat 1991 ---------------RNSSLSSLSDVDQENNN-----NEETGPVRDAEPANAQGQPGKPQASGYA 2035
Rat 2036 PKSFHVEDTPVCFSRNSSLSSLSID---SEDDLLQECISSAMPKKRRPSRLKGE----------- 2086
Rat 2087 -------------------GERQSPRKV-------------------GSVLAEDL---------- 2103
Rat 2104 --------TLDLKDIQRPESEHGLSPDSENFDWKAIQEGANSIVSSLHQAAAA-----------A 2149
Rat 2150 ACLSRQASSD-SDSILSLKSGVSLGSPFHLTPDQEEKPFTSHKGPRILKPGEKSTLEAKKIESEN 2213
Rat 2214 KGIKGGKKVYKSLITGKIRSNSEISS---QMKQPLQTNMPSISRGRTMIHIPGVRNSSSSTSPVS 2275
Rat 2276 KKGPPLKTPA----SKSPSEG-------------------------------------PVATTSP 2299
Rat 2300 ------RGTKPAVKSEL--SPIT---------------------RQTSHISGSNKGPSRSGSRDS 2335
Rat 2336 T--PSRPTQQPL------------SRPMQSPGRNSISPGRNGISTPNKLSQLPRTSSPSTASTKS 2386
Rat 2387 SGSGKMSYTSPGRQLSQQNLSKQTGLSKNASSIPRSESASKGLNQMNNSNGSNKKVELSRMSSTK 2451
Rat 2452 S-----SGSESDRSERPA---------LVRQSTFIKEAPSPTLRRKLEESASFESLSPSSRPDSP 2502
Rat 2503 TRSQAQTPVLSPSLPDMSLSTHPSVQAGGWRKLPPNLSPTIEYSDGRPSKRHDIARSHSESPSRL 2567
Rat 2568 PVNRAGTWKREHSKHSSSLPRVSTWRRTGSSSSILSASSESSEKAKSEDEKHVNSVPGPRQMKEN 2632
Rat 2633 QVPTKGTWRKIKESEISPTNTVSQTTSSGAASGAESKTLIYQMAPAVSKTEDVWVRIEDCPI--- 2694
Rat 2695 -NNPRSGRSPTGNTPPVIDSISEKGNPSIKDSKDTQGKQSVGSGSPVQTVGLENRL 2749 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Apc | XP_006254568.1 | Suppressor_APC | 135..215 | CDD:288297 | 6/37 (16%) |
ATP-synt_B | <200..283 | CDD:304375 | 22/82 (27%) | ||
ARM | 319..421 | CDD:237987 | 49/101 (49%) | ||
ARM | 495..623 | CDD:237987 | 74/128 (58%) | ||
armadillo repeat | 498..534 | CDD:293788 | 17/36 (47%) | ||
armadillo repeat | 542..579 | CDD:293788 | 24/36 (67%) | ||
armadillo repeat | 589..621 | CDD:293788 | 16/31 (52%) | ||
armadillo repeat | 629..670 | CDD:293788 | 28/40 (70%) | ||
ARM | 637..757 | CDD:237987 | 81/119 (68%) | ||
armadillo repeat | 679..713 | CDD:293788 | 25/33 (76%) | ||
armadillo repeat | 721..757 | CDD:293788 | 23/35 (66%) | ||
Arm_APC_u3 | 758..1045 | CDD:293235 | 46/291 (16%) | ||
APC_u5 | 1062..1161 | CDD:293236 | 14/100 (14%) | ||
APC_crr | 1282..>1299 | CDD:283553 | 8/16 (50%) | ||
APC_u9 | 1308..1393 | CDD:293239 | 16/84 (19%) | ||
APC_crr | 1663..1687 | CDD:283553 | 8/23 (35%) | ||
APC_u13 | 1688..1744 | CDD:293240 | 12/59 (20%) | ||
SAMP | 1745..1764 | CDD:283554 | 6/44 (14%) | ||
APC_u14 | 1765..1865 | CDD:293241 | 22/104 (21%) | ||
APC_u15 | 1902..1973 | CDD:293242 | 19/109 (17%) | ||
SAMP | 2061..2080 | CDD:283554 | 4/18 (22%) | ||
APC_basic | 2251..2596 | CDD:283581 | 91/442 (21%) | ||
EB1_binding | 2698..2870 | CDD:283565 | 9/52 (17%) | ||
Apc | NP_001263046.1 | ARM | 222..316 | CDD:237987 | 36/98 (37%) |
armadillo repeat | 258..332 | CDD:293788 | 31/73 (42%) | ||
ARM | 332..448 | CDD:237987 | 46/117 (39%) | ||
armadillo repeat | 369..403 | CDD:293788 | 7/35 (20%) | ||
armadillo repeat | 411..448 | CDD:293788 | 10/36 (28%) | ||
armadillo repeat | 498..539 | CDD:293788 | 25/40 (63%) | ||
ARM | 506..624 | CDD:237987 | 77/117 (66%) | ||
armadillo repeat | 548..582 | CDD:293788 | 27/33 (82%) | ||
armadillo repeat | 590..624 | CDD:293788 | 22/33 (67%) | ||
APC_crr | 837..860 | CDD:283553 | 1/22 (5%) | ||
APC_crr | 903..927 | CDD:283553 | 0/23 (0%) | ||
APC_crr | 1066..1090 | CDD:283553 | 0/23 (0%) | ||
APC_crr | 1247..1271 | CDD:283553 | 6/23 (26%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166341032 | |
Domainoid | 1 | 1.000 | 84 | 1.000 | Domainoid score | I8062 |
eggNOG | 1 | 0.900 | - | - | E1_KOG2122 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 612 | 1.000 | Inparanoid score | I875 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0002986 | |
OrthoInspector | 1 | 1.000 | - | - | mtm9133 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_105450 | |
Panther | 1 | 1.100 | - | - | O | PTHR12607 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X2812 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
12 | 11.840 |