Protein Alignment Acadm and Arc42

DIOPT Version :9

• Sequence 1: NP_058682.2
• Gene: Acadm / 24158
• RGDID: 2012
• Length: 421
• Species: Rattus norvegicus
• Sequence 2: NP_650840.1
• Gene: Arc42 / 42364
• FlyBaseID: FBgn0038742
• Length: 405
• Species: Drosophila melanogaster
• Alignment Length: 381
• Identity: 148/381 - (38%)
• Similarity: 208/381 - (54%)
• Gaps: 6/381 - (1%)

  Rat    41 LTEQQKEFQTIARKFAREEIIPVAPDYDKSGEYPFPLIKRAWELGLINTHIPESCGGLGLGTFDA 105
            |:|..:..|...|.||..|:...|..:|:...||...|::..|||::...|||..||.||.....
  Fly    27 LSETHQMLQKSCRDFANNELSGNAAKFDREHLYPEKQIRQMGELGVMAVAIPEELGGTGLDYVAY 91

  Rat   106 CLITEELAYGC--TGVQTAIEANSLGQMPVIIAGNDQQKKKYLGRMTEQLMMCAYCVTEPSAGSD 168
            .:..||::.||  .||..::. |||...|::..|||.|||.|:...|....:..:.::||..|||
  Fly    92 AIAMEEISRGCASAGVIMSVN-NSLYLGPLLSFGNDAQKKDYITPFTTGERVGCFALSEPGNGSD 155

  Rat   169 VAGIKTKAEKKGDEYVINGQKMWITNGGKANWYFVLTRSNPDPKVPASKAFTGFIVEADTPGIHI 233
            .....|.|..|||.:|:||.|.||||..:|....|...:|...|   .|..:.|||...|.|..:
  Fly   156 AGAASTIATDKGDHFVLNGTKAWITNAFEAEAAIVFATTNKQLK---HKGISAFIVPKATKGFSL 217

  Rat   234 GKKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDRTRPTVAAGAVGLAQRALDE 298
            ||||..:|.|.|.|..:.|||..|||||:|...|.||||||...|..|..:|..|:|:.|.||:.
  Fly   218 GKKEDKLGIRGSSTCQLIFEDCVVPKENMLGEPGFGFKIAMQTLDAGRIGIAGQALGIGQAALEL 282

  Rat   299 ATKYALDRKTFGKLLVEHQGVSFLLAEMAMKVELARLSYQRAAWEVDSGRRNTYFASIAKAFAGD 363
            |..||..|:.|||.:.:.|.:...:|:|::.:|.|||...||||..|..:..|..|::||..|.:
  Fly   283 AVDYAQKRQAFGKPIAKLQSIQQKIADMSLAMESARLLTWRAAWLKDQKQPYTKEAAMAKLAASE 347

  Rat   364 IANQLATDAVQIFGGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIEKY 419
            .|...:...:||.||.|:.|:...|:..|||:|.:|||||::||||:||...:::|
  Fly   348 AATLCSHQCIQILGGMGYVTDMAAERHYRDARITEIYEGTSEIQRLVIAGSILKEY 403

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Acadm	NP_058682.2	CaiA	39..420	CDD:224871	148/381 (39%)
		MCAD	41..418	CDD:173846	147/378 (39%)
		Substrate binding. /evidence=ECO:0000250|UniProtKB:P41367	278..281		1/2 (50%)
Arc42	NP_650840.1	CaiA	27..405	CDD:224871	148/381 (39%)
		SCAD_SBCAD	29..401	CDD:173847	146/375 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG1960
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D589058at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_101120
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.720