DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldb3 and ey

DIOPT Version :9

Sequence 1:NP_036048.3 Gene:Ldb3 / 24131 MGIID:1344412 Length:723 Species:Mus musculus
Sequence 2:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster


Alignment Length:431 Identity:93/431 - (21%)
Similarity:150/431 - (34%) Gaps:143/431 - (33%)


- Green bases have known domain annotations that are detailed below.


Mouse    33 TPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYN---LSLTLQKSKRPIPISTTAP 94
            :|.|.:|.|.|..|    :..|.:..|:..|.:.:.: |.:.|   |...:..|:.|.||....|
  Fly   560 SPNSLSACSSLLSG----SAGGPSVSTINGLSSPSTL-STNVNAPTLGAGIDSSESPTPIPHIRP 619

Mouse    95 PIQS------------------PLPVIPHQKDPALDTN----GSLATPSPSPEARASPGALEFGD 137
            ...|                  ||.|..||....:.:|    |....|:.||....:.|:  ||.
  Fly   620 SCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPAISPRLNFNSGS--FGA 682

Mouse   138 TFSSSFSQTSVCSPLMEASGPVLPLGS-------PVAKASSEGAQGSVSPKVL--------PGPS 187
            .: |:...|::  .:.::.|.|.|:.|       |:|..|....||.::|..|        |.|.
  Fly   683 MY-SNMHHTAL--SMSDSYGAVTPIPSFNHSAVGPLAPPSPIPQQGDLTPSSLYPCHMTLRPPPM 744

Mouse   188 QPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGAGLLGGSLPVKDLAVDSASPVYQAVIKTQSK 252
            .|..::...|                 ..|:.:|.||..|                         
  Fly   745 APAHHHIVPG-----------------DGGRPAGVGLGSG------------------------- 767

Mouse   253 PEDEADEWARRSSNLQSRSFRILAQMTGTEYMQDPDEEALRRSSTPIEHAPVCTSQATSPLLPAS 317
                      :|:||.       |..:|:.|      |.|  |:..:...|:.:|.|......|:
  Fly   768 ----------QSANLG-------ASCSGSGY------EVL--SAYALPPPPMASSSAADSSFSAA 807

Mouse   318 AQSPAAASP---IA----ASPTLATAAATHAAAASAAGPAASPVENPRPQASAYSPAAAASPAPS 375
            :.:.|..:|   ||    .||   .::|:|...|.::|.::.|:.   |..|:|           
  Fly   808 SSASANVTPHHTIAQESCPSP---CSSASHFGVAHSSGFSSDPIS---PAVSSY----------- 855

Mouse   376 AHTSYSEGPAAPAPKPRVV--TTASIRPSVYQPVPASSYSP 414
            ||.||:...:|....|...  |:|.:.|...|...:..|||
  Fly   856 AHMSYNYASSANTMTPSSASGTSAHVAPGKQQFFASCFYSP 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldb3NP_036048.3 PDZ_signaling 5..81 CDD:238492 12/50 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..134 14/66 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 164..193 11/43 (26%)
DUF4749 191..293 CDD:374237 13/101 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 280..423 36/144 (25%)
PHA03247 <378..528 CDD:223021 11/39 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 436..525
LIM1_ZASP_Cypher 547..598 CDD:188838
LIM2_Enigma_like 606..657 CDD:188748
LIM3_ZASP_Cypher 665..719 CDD:188844
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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