| Sequence 1: | NP_001380015.1 | Gene: | prp-19 / 24104882 | WormBaseID: | WBGene00020423 | Length: | 492 | Species: | Caenorhabditis elegans |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_006231076.1 | Gene: | Prpf19 / 246216 | RGDID: | 708496 | Length: | 523 | Species: | Rattus norvegicus |
| Alignment Length: | 524 | Identity: | 261/524 - (49%) |
|---|---|---|---|
| Similarity: | 349/524 - (66%) | Gaps: | 35/524 - (6%) |
- Green bases have known domain annotations that are detailed below.
|
Worm 1 MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGTGSAPR 65
Worm 66 NVSGTSIPSLLKMLQDEW-------------------DTVMLNSFSLRQQLQIARQELSHSLYQH 111
Worm 112 DAACRVISRLSKELTAAREALSTLKPHTSAKVDDDVSIDESE-----------DQQGLSEAILAK 165
Worm 166 LEEKSKSLTAERKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPGITALDI---KGNLSLTG 227
Worm 228 GIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVH 292
Worm 293 QAPVTDISLNASGDYILSASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGA 357
Worm 358 ADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEE 422
Worm 423 KQPINSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSL 487
Worm 488 RVFS 491 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| prp-19 | NP_001380015.1 | RING-Ubox_PRP19 | 4..56 | CDD:319570 | 30/51 (59%) |
| Prp19 | 70..134 | CDD:400774 | 51/82 (62%) | ||
| SMC_prok_B | <74..>201 | CDD:274008 | 74/156 (47%) | ||
| WD40 | 213..491 | CDD:238121 | 140/280 (50%) | ||
| WD40 repeat | 255..291 | CDD:293791 | 13/35 (37%) | ||
| WD40 repeat | 296..335 | CDD:293791 | 24/38 (63%) | ||
| WD40 repeat | 342..377 | CDD:293791 | 20/34 (59%) | ||
| WD40 repeat | 383..418 | CDD:293791 | 26/34 (76%) | ||
| WD40 repeat | 456..490 | CDD:293791 | 12/33 (36%) | ||
| Prpf19 | XP_006231076.1 | RING-Ubox_PRP19 | 4..56 | CDD:319570 | 30/51 (59%) |
| Prp19 | 69..152 | CDD:400774 | 51/82 (62%) | ||
| WD40 | 242..522 | CDD:238121 | 140/280 (50%) | ||
| WD40 repeat | 243..281 | CDD:293791 | 17/37 (46%) | ||
| WD40 repeat | 287..323 | CDD:293791 | 13/35 (37%) | ||
| WD40 repeat | 328..363 | CDD:293791 | 22/34 (65%) | ||
| WD40 repeat | 373..408 | CDD:293791 | 20/34 (59%) | ||
| WD40 repeat | 414..450 | CDD:293791 | 27/35 (77%) | ||
| WD40 repeat | 457..483 | CDD:293791 | 11/25 (44%) | ||
| WD40 repeat | 495..521 | CDD:293791 | 10/25 (40%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C162963431 | |
| Domainoid | 1 | 1.000 | 108 | 1.000 | Domainoid score | I4362 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG0289 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 1 | 1.050 | 516 | 1.000 | Inparanoid score | I747 |
| OMA | 1 | 1.010 | - | - | QHG54686 | |
| OrthoDB | 1 | 1.010 | - | - | D1049599at2759 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0003405 | |
| OrthoInspector | 1 | 1.000 | - | - | oto29078 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_102145 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR43995 |
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 1 | 1.000 | - | - | X2757 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 14 | 13.810 | |||||