DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kcnv2 and Shawl

DIOPT Version :9

Sequence 1:NP_899002.1 Gene:Kcnv2 / 240595 MGIID:2670981 Length:562 Species:Mus musculus
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:560 Identity:133/560 - (23%)
Similarity:215/560 - (38%) Gaps:164/560 - (29%)


- Green bases have known domain annotations that are detailed below.


Mouse    94 LDGHNDTPAQMSTLKVNVGGHSYLLECCELANYPKTRLGRLATSTTRRGQLGLCDDYEAQTDEYF 158
            :||.|       .:.:||.|..|......|...|.|||.||..:..         :|:...:|||
  Fly     1 MDGEN-------RIILNVSGIRYETYKATLKKIPATRLSRLTEALA---------NYDPVLNEYF 49

Mouse   159 FDRDPAVFQLIYNFYTSGVLLVRDELCPRSFLEELGYWGVRLKYTPRCCRICFEERRD-----EL 218
            |||.|.||..|.|:|.:|.|....::|...|.|||.:||:.......||...:...||     .:
  Fly    50 FDRHPGVFTQILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAI 114

Mouse   219 SEQLKIQRELRAQAQAEEAEELF--------RDMRFYGPQRQRLWNLMEKPFSSVAAKAMGVATN 275
            .::|.|:.|   :...|:...||        .::..:...:.::|.:.::|.||..||.:...:.
  Fly   115 LDKLDIENE---KPTEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSV 176

Mouse   276 LFVLISVVALALNT-------VEEMQHQAE-QGTGG----------------------------- 303
            .|:.:||::..|.|       :....|.|. .|.||                             
  Fly   177 FFIFVSVISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSI 241

Mouse   304 ----------------------------------------------------------------- 303
                                                                             
  Fly   242 GPTFRVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGW 306

Mouse   304 ----GDPRPILEHVEMLCVAFFTLEFLLRLASTPNLQRFARSALNLVDLVAILPFYLQLLLECFT 364
                |.|.....:||::|..:|.:|.::||..:|||.:|.:|.:|::|..|.|.||         
  Fly   307 IETYGQPHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY--------- 362

Mouse   365 SEDQRHNKDSPREHDLETVGRVGKVGQVLRIMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVG 429
                           .:.:.|:|:...:|....::||.|:.||.|||.|||....|.:...:::.
  Fly   363 ---------------TDVMQRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELT 412

Mouse   430 CLMLFITMGIFSFSAAVYSVE--HDVPGTNFTSILHAWWWAAVSISTVGYGDMYPETHLGRLFAF 492
            .|:.|:.:||..|::..|..|  .|.|...|.||....|||.|:::||||||:.|:|:.|.....
  Fly   413 LLVFFLVLGIVFFASLAYYAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGA 477

Mouse   493 LCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTAIRRER 532
            ||...|::...:|:.::.:.||.:||..:|......:|.|
  Fly   478 LCALAGVLTIALPVPVIVSNFSMFYSHTQARSKLPKKRRR 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kcnv2NP_899002.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34
BTB 107..198 CDD:197585 32/90 (36%)
BTB 107..198 CDD:295341 32/90 (36%)
Ion_trans 305..521 CDD:278921 67/217 (31%)
Ion_trans_2 434..509 CDD:285168 28/76 (37%)
Selectivity filter. /evidence=ECO:0000250 474..479 4/4 (100%)
ShawlNP_001097131.2 BTB 7..99 CDD:197585 34/100 (34%)
BTB_2 7..97 CDD:280393 33/98 (34%)
Ion_trans 307..506 CDD:278921 68/222 (31%)
Ion_trans_2 <449..499 CDD:285168 17/49 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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