Sequence 1: | XP_017168851.1 | Gene: | Scn11a / 24046 | MGIID: | 1345149 | Length: | 1782 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261172.1 | Gene: | NaCP60E / 37981 | FlyBaseID: | FBgn0085434 | Length: | 2896 | Species: | Drosophila melanogaster |
Alignment Length: | 2524 | Identity: | 748/2524 - (29%) |
---|---|---|---|
Similarity: | 1099/2524 - (43%) | Gaps: | 817/2524 - (32%) |
- Green bases have known domain annotations that are detailed below.
Mouse 37 TFDSLAAIEKRITI---QKEKKKSKDKAATEPQ-----PRPQLDLKASRKLPKLYGDVPPDLIAK 93
Mouse 94 PLEDLDPFYKDHKTFMVLNK---KRTIYRFSAKRALFILGPFNPIRSFMIRISVHSVFSMFIICT 155
Mouse 156 VIINCMFMANNSSVDSRPSSNIPEYVFIGIYVLEAVIKILARGFIVDEFSYLRDPWNWLDFIVIG 220
Mouse 221 TAIAPCFLGNKVNNLSTLRTFRVLRALKAISVISGLKVIVGALLRSVKKLVDVMVLTLFCLSIFA 285
Mouse 286 LVGQQLFMGILSQKCIKDDCGPNAFSN---KDCFVKENDSEDF--------IMCGNWLGRRSCPD 339
Mouse 340 GSTCNKTTFNPDYNYTNFDSFGWSFLAMFRVMTQDSWEKLYRQILRTSGIYFVFFFVVVIFLGSF 404
Mouse 405 YLLNLTLAVVTMAYEEQNRNVAAETEAKEKMFQEAQQLLREEKEALVAMGIDRTSLNSLQA---- 465
Mouse 466 --SSFSPKK---RKFFGSKTRKSFFMRGSKTARASASDSEDD----------------------- 502
Mouse 503 ----ASKNPQLLEQTKRLSQ------NLPVE---------------------------------- 523
Mouse 524 ---------------------LFDEHVDPLHRQRALSAVSILTITMQEQEKSQEPCFPCGKNLA- 566
Mouse 567 --------------SKYLVWECSP---------------PWLCIKKVLQTIMTDPFTELAITICI 602
Mouse 603 IVNTVFLAMEHHNMDNSLKDILKIGNWVFTGIFIAEMCLKIIALDPYHYFRHGWNIFDSIVALVS 667
Mouse 668 LADVLFHKLSKNLSFLASLRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLTIVVFIFSVV 732
Mouse 733 GMRLFGAKFNKTCSTSPESLRRWHMGDFYHSFLVVFRILCGEWIENMWECM--QEMEGSPLCVIV 795
Mouse 796 FVLIMVVGKLVVLNLFIALLLNSFSNEE--------------------------------KD--- 825
Mouse 826 --------------------------------GNPEGETRKTK---------------------- 836
Mouse 837 -------------------------VQL------------------------------------- 839
Mouse 840 ----------------------------------------------------------------- 839
Mouse 840 -------------------------------------ALDRFSRA-------------------- 847
Mouse 848 ----------------------------------FYFM-----------ARALQNFCCKRCRRQN 867
Mouse 868 SP--KPNEAT-----------ESFAGE----SRDTATLDTR-------------SWKEYDSEMTL 902
Mouse 903 YTG--------QAGAPLAP-------------------------------LAKE---EDDMECCG 925
Mouse 926 E----CD---------------ASPTSQ-----------------------------------PS 936
Mouse 937 EEAQACDLPLKTKRLPSPDDHG------------------------------------------- 958
Mouse 959 ---VEMEVFSE----------------------------------------------------ED 968
Mouse 969 PNLTI------QSARKKS------DAASMLS--------------------------------EC 989
Mouse 990 STIDLNDIF----RNLQ------------KTVSPQKQPDRCFPKGLSCIFLCCKTIKKKSPWVL- 1037
Mouse 1038 ---------WWNLRKTCYQIVKHSWFESFIIFVILLSSGALIFEDVNLPSRPQVEKLLKCTDNIF 1093
Mouse 1094 TFIFLLEMILKWVAFGFRKYFTSAWCWLDFLIVVVSGLSL-----TNLPNLKSFRNLRALRPLRA 1153
Mouse 1154 LSQFEGMKVVVNALMSAIPAILNVLLVCLIFWLIFCILGVNFFSGKFGRCINGTDINKYFNASNV 1218
Mouse 1219 PNQSQCLVSNYTWKVPNVNFDNVGNAYLALLQVATYKGWLDIMNAAVDSRGKDEQPAFEANLYAY 1283
Mouse 1284 LYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISG--QDIFMTEEQKKYYNAMKKLGTKKPQKPI 1346
Mouse 1347 PRPLNKCQAFVFDLVTSQVFDVIILGLIVTNMIIMMAESEGQPNEVKKIFDILNIVFVVIFTVEC 1411
Mouse 1412 LIKVFALRQHYFTNGWNLFDCVVVVLSIISTLVSGLENSNVFPPTLFRIVRLARIGRILRLVRAA 1476
Mouse 1477 RGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMNWFSKVKRGSGIDDIFNFDTFSGSMLCLF 1541
Mouse 1542 QITTSAGWDALLNPMLESKASC----NSSSQESCQQPQIAIVYFVSYIIISFLIVVNMYIAVILE 1602
Mouse 1603 NFNTATEESEDPLGEDDFEIFYEIWEKFDPEATQFIQYSSLSDFADALPEPLRVAKPNRFQFLMM 1667
Mouse 1668 DLPMVMGDRLHCMDVLFAFTTRVLGNSSGLDTMKAMMEE---KFMEANPFKKLYEPIVTTTKRKE 1729
Mouse 1730 EEECAAVIQRAYRRHMEKMIKLKLKGRSSSSLQVFCNG----DLSSLDVPKIKV 1779 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Scn11a | XP_017168851.1 | Ion_trans | 145..424 | CDD:366146 | 127/289 (44%) |
Ion_trans | 591..825 | CDD:366146 | 119/267 (45%) | ||
Na_trans_assoc | 830..1047 | CDD:368948 | 76/761 (10%) | ||
Ion_trans | 1051..1315 | CDD:366146 | 149/268 (56%) | ||
Na_channel_gate | 1307..1359 | CDD:240441 | 30/53 (57%) | ||
Ion_trans | 1363..1612 | CDD:366146 | 120/252 (48%) | ||
GPHH | 1623..1670 | CDD:374878 | 22/46 (48%) | ||
NaCP60E | NP_001261172.1 | Ion_trans | 152..371 | CDD:278921 | 100/222 (45%) |
Ion_trans | 705..902 | CDD:278921 | 93/199 (47%) | ||
Ion_trans | 1768..2019 | CDD:278921 | 145/252 (58%) | ||
Na_channel_gate | 2009..2063 | CDD:240441 | 30/53 (57%) | ||
Ion_trans | 2085..2320 | CDD:278921 | 113/234 (48%) | ||
GPHH | 2331..2386 | CDD:293510 | 25/54 (46%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D37221at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100419 | |
Panther | 1 | 1.100 | - | - | O | PTHR10037 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 5.820 |