DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnf13 and C18B12.4

DIOPT Version :10

Sequence 1:NP_001106884.1 Gene:Rnf13 / 24017 MGIID:1346341 Length:381 Species:Mus musculus
Sequence 2:NP_510498.1 Gene:C18B12.4 / 181600 WormBaseID:WBGene00007666 Length:456 Species:Caenorhabditis elegans


Alignment Length:366 Identity:97/366 - (26%)
Similarity:157/366 - (42%) Gaps:64/366 - (17%)


- Green bases have known domain annotations that are detailed below.


Mouse    69 INSKPENACEPIVPPPLKDNSSGTFIVLIRRLD----CNFDIKVLNAQRAGY--KAAIVHNVDSD 127
            :..:|.:||.|:................:.|.:    |.|..:....|.:.|  :..|.:|....
 Worm    71 VGVEPVDACGPVRIAQNHTTRCHNLFAFVSRSNISHPCKFSHQAFMVQNSTYPFRLVIFYNYPGQ 135

Mouse   128 DLISMGSNDIDTLKKIDIPSVFIGESSANSLKDEFTYEKGGHI-ILVPELSLPLEYYLIPFLIIV 191
            :.|||...::  ..|::||.:.|..:....:..:|:...|..: :.:......|..||||||:::
 Worm   136 EPISMEGTEL--RDKVNIPVLMISHACKEEIAKKFSDTAGYRLRVRIDPGYYELFRYLIPFLVVI 198

Mouse   192 GICLILIVIFMITKFVQDRHRNRRNRLRKDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRIL 256
            ..|..|.:|.:..:...:|.:..:.||.|..|||:||.|::.||:.|.||||||.:..|:|||.|
 Worm   199 VFCFALFLITLCVRGCVERRKLNKRRLSKRNLKKIPVKKYRLGDDPDTCAICLESFASGEKLRHL 263

Mouse   257 PCSHAYHCKCVDPWLTKTKKTCPVCKQKV--------------VPSQGDSDS------------- 294
            ||.|.:||.|:|.|||:|:|.||:||:|:              ..|||.:|:             
 Worm   264 PCRHVFHCNCIDVWLTQTRKICPLCKRKIGTDSDSECSTNDLASTSQGPNDATALYNNADNQSGF 328

Mouse   295 ----------DTDSSQE---ENQVSEHTPLLPPSASARTQSFGSLSESHSHHNMTESSDYEDDD- 345
                      |..||||   :..:..|.............:|..|..|..|.::...|..|... 
 Worm   329 ELPVPQGQMVDLWSSQEALVDQDIVLHNTTRRSITGFVRNAFRKLRNSPRHRDVDVHSGLEGGSY 393

Mouse   346 --NEETDSSDAD----NEITDHSVVVQLQPNGEQDYNIANT 380
              .::|.|:|.|    ||::|        |....:.||.::
 Worm   394 LVRQQTTSNDNDHLLENEVSD--------PTSSSELNIPSS 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnf13NP_001106884.1 PA_C_RZF_like 23..180 CDD:239038 20/117 (17%)
RING-H2_RNF13 230..288 CDD:438450 32/71 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 285..381 26/143 (18%)
C18B12.4NP_510498.1 PA <74..176 CDD:333703 20/103 (19%)
HRD1 <223..>335 CDD:227568 44/111 (40%)
RING-H2_RNF103 242..295 CDD:438136 30/52 (58%)

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