DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pcbp1 and mub

DIOPT Version :9

Sequence 1:NP_035995.1 Gene:Pcbp1 / 23983 MGIID:1345635 Length:356 Species:Mus musculus
Sequence 2:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster


Alignment Length:379 Identity:174/379 - (45%)
Similarity:235/379 - (62%) Gaps:45/379 - (11%)


- Green bases have known domain annotations that are detailed below.


Mouse     3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNA 67
            |.:.....:|||||||:|.|||||||||||||.|.|.||||||:||||:|:|||||:|::|.|||
  Fly    13 ASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSGTTNA 77

Mouse    68 IFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQ 132
            ||.||.:|..|.||.. |...:.....:..:.:||:|||:||||||||.|.||||||::||..:|
  Fly    78 IFSAFTLITKKFEEWC-SQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQ 141

Mouse   133 VAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMP-ASSPVICAG 196
            ||.:|||||||||:|::|..:.:|:|:.||||||||:   .|:|  .||||:|.| .:.|||.|.
  Fly   142 VASEMLPNSTERAVTLSGSAEQITQCIYQICLVMLES---PPRG--ATIPYRPKPQVTGPVILAN 201

Mouse   197 G-------------QDRC-----SDAAGYPHA-THDLEGPPLDAYSIQG-----QHTISPL-DLA 236
            |             |:.|     :.|.|..|| ...|..|.|....:||     .|.:..: |:|
  Fly   202 GQAFTIQGNYAVPTQETCPVFPLALATGGLHAGISGLADPLLKGAHLQGAIPAHHHHLQQMPDVA 266

Mouse   237 KLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWAS-LDASTQTTHELTIPNNLIGCIIGRQGA 300
            | |.:|..        ...|.||::.:|.....:.|: .:.:.|..||:|:.|:|||||||:.|.
  Fly   267 K-NPLASL--------AALGLAGMNPASTGGINHTANPANRAQQQQHEMTVSNDLIGCIIGKGGT 322

Mouse   301 NINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAASISLAQYLINARLSSEK 351
            .|.||||:|||.|:|:|..|   |::.|.:||:|:..|::|||||||..:..:|
  Fly   323 KIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMSVELQK 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pcbp1NP_035995.1 KH-I_PCBP1_2_rpt1 13..82 CDD:411943 50/68 (74%)
KH-I_PCBP1_2_rpt2 92..169 CDD:411946 45/76 (59%)
KH-I_PCBP1_2_rpt3 276..351 CDD:411949 38/77 (49%)
mubNP_001246875.1 PCBP_like_KH 25..86 CDD:239089 45/60 (75%)
PCBP_like_KH 109..172 CDD:239089 39/62 (63%)
KH-I 305..368 CDD:238053 33/62 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831592
Domainoid 1 1.000 97 1.000 Domainoid score I7213
eggNOG 1 0.900 - - E1_KOG2190
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 328 1.000 Inparanoid score I2438
Isobase 1 0.950 - 0.861654 Normalized mean entropy S2056
OMA 1 1.010 - - QHG52907
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001027
OrthoInspector 1 1.000 - - otm43000
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10288
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X408
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.810

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