DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pacsin2 and Cip4

DIOPT Version :9

Sequence 1:NP_001345570.1 Gene:Pacsin2 / 23970 MGIID:1345153 Length:488 Species:Mus musculus
Sequence 2:NP_001097501.1 Gene:Cip4 / 38534 FlyBaseID:FBgn0035533 Length:665 Species:Drosophila melanogaster


Alignment Length:594 Identity:119/594 - (20%)
Similarity:212/594 - (35%) Gaps:178/594 - (29%)


- Green bases have known domain annotations that are detailed below.


Mouse    43 NCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWIAVMSEAERVSELHLEVKASLMNE 107
            |.|.:|..||       ||:|.:.|:||:   .|...:|       |.|......::...:|:.|
  Fly    94 NFLRDRVAIE-------TEYAGKLRRLVK---NYQPKKK-------EEEDNEFTSVQAFRNLLKE 141

Mouse   108 --DFEKIKNWQKEAFHKQMMGGF--------KETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHTA 162
              |....:....|:...|::.|.        :|.|:........|:....:|..::.||:.:..|
  Fly   142 VGDLAGQREVVSESLQLQIIAGVTLLSKTLREERKKCLSDGATLQQNLTTQLSSLDRAKRNYEKA 206

Mouse   163 CKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKDKYEKSLKELDQTTPQ-YMENM 226
            .::.:.|:.....:..|.:|:..::::.::.:....|.....|::|...|::.:....| |...:
  Fly   207 YRDSEKAVDSYKRADMDLNLSRAEVERYKNVMTSKIQQSDDAKNEYANQLQKTNNLQQQHYSMLL 271

Mouse   227 EQVFEQCQQFEEKRLRFFREVLL---EVQKHLDLSNVASYKTIYRELEQSIKAADAVED------ 282
            ..|..:.|:.:|||.|.|||.::   :|:     |:||  ..|.|.:|..:||.:::.:      
  Fly   272 PSVLNRLQELDEKRTRGFREFIVGAADVE-----SSVA--PIIARCMEGIVKAGESINEKEDTFK 329

Mouse   283 -LRWFRANHGPGMAMNWPQF--------EDEEWS------ADLNRTLSRREKKKAVDGVTLTGIN 332
             :..:::...|...:.:...        :|..:|      ..:..|:|..:.||.|....:.|.|
  Fly   330 VIERYQSGFTPPRDIPFEDLSKCDPDSVQDSHYSNSTSNHLTIRGTMSANKLKKRVGIFNIFGSN 394

Mouse   333 Q---TGDQSGQNKPGSNL--------------SVPSNPAQSTQLQ--------------SSYNPF 366
            :   |.|  ||.:..|:|              .:..|.||.|:.:              |..||.
  Fly   395 KNSLTAD--GQKEDFSDLPPNQRRKKLQAKIAELTQNIAQETKARDGLMKMKIVYEANSSLGNPM 457

Mouse   367 EDEDDTGSSISEKEDIKAKNVSSY----EKTQTYPT---------------------------DW 400
            ..|.....|..:.|.:|. ::..|    ||....||                           |.
  Fly   458 TVEGQLNESEHKLEKLKV-DLKKYQGFLEKASQVPTATSSPQASRNQLQNGHRTSRHSNGSADDH 521

Mouse   401 SDDESNNP-----FSSTDA---------------NGDSNP-----------------------FD 422
            .||..:.|     .|.:|:               ||.::|                       ..
  Fly   522 HDDGDDQPDDAGSLSRSDSEDNVAQIQNGHNNNNNGSASPESGLGTSHTSLPGSGQGSANENAIG 586

Mouse   423 EDTTSGTEV-------RVRALYDYEGQEHDELSFKAGDELTKIEDEDEQGWCKGRLDSG----QV 476
            |||...|||       :.||||.:|......:....|:||..||.:...||.:.|.::.    ..
  Fly   587 EDTYYETEVETLNPVGKCRALYPFEASSEGSIPMSEGEELQVIEIDQGDGWTRVRRENNSNGWDE 651

Mouse   477 GLYPANYVE 485
            |..|.:|:|
  Fly   652 GFVPTSYIE 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pacsin2NP_001345570.1 F-BAR_PACSIN2 18..275 CDD:153363 53/245 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 317..428 39/215 (18%)
NPF <342..430 CDD:406900 30/189 (16%)
NPF1 364..366 1/1 (100%)
NPF2 407..409 1/6 (17%)
NPF3 419..421 1/24 (4%)
SH3_PACSIN1-2 431..486 CDD:212931 18/66 (27%)
Cip4NP_001097501.1 F-BAR_CIP4-like 69..319 CDD:153337 55/248 (22%)
HR1_CIP4-like 412..488 CDD:212009 14/76 (18%)
SH3_CIP4-like 603..661 CDD:212844 17/58 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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