Sequence 1: | NP_035966.2 | Gene: | Lamc3 / 23928 | MGIID: | 1344394 | Length: | 1581 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_476617.1 | Gene: | LanA / 38723 | FlyBaseID: | FBgn0002526 | Length: | 3712 | Species: | Drosophila melanogaster |
Alignment Length: | 2740 | Identity: | 521/2740 - (19%) |
---|---|---|---|
Similarity: | 792/2740 - (28%) | Gaps: | 1308/2740 - (47%) |
- Green bases have known domain annotations that are detailed below.
Mouse 46 PEFENAAFGRRAEASHTCGRP---PEDFCPHVGAPG----------AGLQCQRCDDADPGRRHDA 97
Mouse 98 SYLTDFHSPDDSTWWQSPSMAFGVQYPTSVNLTLSLGKAYEITYVRLKFHTS-RPESFAIYKRTY 161
Mouse 162 ASGPWEPYQYYS---ASCQKTYGRPEGHYLRPGEDERVAFCTSEFSDISPLNGGNVAFSTLEGRP 223
Mouse 224 SAYNFEESPVLQEWVTSTDILISLDRLNTFGDDIF----KDPRVLQSYYYAVSDFSVGGRCKCNG 284
Mouse 285 HASEC---EPNAAGQ-LACRCQHNTTGVDCERCLPFFQDRPWARGTAEDANECLPCNCSGHSEEC 345
Mouse 346 TFDRELYRS------TGH---GGHCQRCRDHTTGPHCERCEKNYYR-----WSPKTPCQP----- 391
Mouse 392 ----------------------------------------------------------------- 391
Mouse 392 ----------------------CDCHPAGSLS--------------------------------- 401
Mouse 402 ---LQCDN-----------SGVCPCKPTVTGWKCDRCLPGFHSLSEGGCRPCACNVAGS------ 446
Mouse 447 ----------------------------------------------------------------- 446
Mouse 447 ----------------------------------------------------------------- 446
Mouse 447 ------------LGTCDPRSGNCPCKENVEGSLCDRCRPGTFNLQPHNPVGCSSCFC-YGHS--K 496
Mouse 497 VCSPAAGFQE----------------------HHIRSDFRHGA--GGWQIR------------SM 525
Mouse 526 G-------------------------------------------VSKRPLQ-------------- 533
Mouse 534 ---------------------------------------------WSQSGLL---------LG-- 542
Mouse 543 -----------------------------------------------------LRGGEE-----L 549
Mouse 550 SAPKK--------FLGDQRL--SYG---------------------------------------- 564
Mouse 565 ------QPVILTLQVPPGG----------------------SP---------------------- 579
Mouse 580 ---------------PP------------------------------------------------ 581
Mouse 582 -------------------IQLRLEGAGLALSLRPSSLPSPQ---------DTRQPRRVQLQF-- 616
Mouse 617 -----------LLQETSEEAESPLPT-----FHFQRLLSNLTALSIW------------------ 647
Mouse 648 ---------------------------------------------------TSGQ---------- 651
Mouse 652 -----GPGHSG--QVLLCE---------------------------------------------- 663
Mouse 664 ----------------------------------------------------------------- 663
Mouse 664 --------------VQLTS-----------AWP------------------QRE----------- 674
Mouse 675 ---------------------------------LAP----------------------------- 677
Mouse 678 -------------PAS--------------------W---------------------------- 681
Mouse 682 --VETCLCPQGYTGQFCEFCALGYKREIPHGGPYAN-CIPCTCNQHG-TCDPNTGIC-LCGHHTE 741
Mouse 742 GPSCERCMPGFYGNAFSGRADDCQPCPCP------GQSACATIPESGDVVCTHCPPGQRGRRCES 800
Mouse 801 CEDGFFGDPLGLSGAPQPCRRCQCSGNVDLNAVGNCDPHSGHCLRCLYNTTGAHCEHCREGFYGS 865
Mouse 866 AVATRPVDKCAPCSCDLRGSVSEKTCNPVTGQCVCLPYVSGRDCSRCSPGFYDLQSGRGCQSCKC 930
Mouse 931 HPLGSLEN--KCHPKTGQCPCRPGVTGQACDRCQLGFFGFSIKGCRDCRCSPLGAASSQCHENS- 992
Mouse 993 TCVCRPGFVGYKCDRCQDNFFLADGDTGCQECPTCYALVKEEAAKLKARLMLMEGWLQRSDCGSP 1057
Mouse 1058 WGPLDILQGEAPLGDVYQGHHLLQE----TRGTFLQQMVGLEDSVKATWEQLQVLRGHVHCAQAG 1118
Mouse 1119 AQKTCIQLAELEETLQSSEEEVLRA-ASALSFLASLQKGSSTPTNWSHLASEAQILARSHRDTAT 1182
Mouse 1183 KIEATSERALLAS----NASYELLKLMEGRVASEA------QQELEDR---YQEVQAAQTALGIA 1234
Mouse 1235 VAEALP-KAE-KALATVKQVIGDAAPHLGLLVT------PEAMNFQARGLSWKVKAL-------- 1283
Mouse 1284 -EQKLEQKE----------------PEVGQSVGALQVEAGRALEKME----------PFMQLRNK 1321
Mouse 1322 TTAAFTRASSAVQAAKVTVIGAETLLADLEGMKLRSPLPKEQAALKKKAGSIRTRLLEDTKRKTK 1386
Mouse 1387 QAERMLGNAASLSSSTKKKSKEAELMSKDNAKLSRALLREGKQGYRHA-SRLASQTQATLRRASR 1450
Mouse 1451 LLLTSEAHKQELEEAKQVTSGL-STVERQI-RESRISLEKDTKVLSELLVKLGSLGVHQAPAQ-- 1511
Mouse 1512 -------TLNETQRALESLRLQLDSHGALHHKLRQLEEESARQELQI--------QSFEDDLAEI 1561
Mouse 1562 RADKHNLETI 1571 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lamc3 | NP_035966.2 | Laminin_N | 53..278 | CDD:278484 | 74/245 (30%) |
EGF_Lam | 279..326 | CDD:238012 | 23/50 (46%) | ||
Laminin_EGF | 336..392 | CDD:278482 | 28/161 (17%) | ||
EGF_Lam | 391..437 | CDD:238012 | 20/184 (11%) | ||
Laminin_EGF | 439..486 | CDD:278482 | 21/194 (11%) | ||
Laminin_B | 550..669 | CDD:278481 | 39/549 (7%) | ||
EGF_Lam | 718..765 | CDD:238012 | 28/48 (58%) | ||
EGF_Lam | 766..814 | CDD:238012 | 21/53 (40%) | ||
Laminin_EGF | 822..>864 | CDD:278482 | 22/41 (54%) | ||
Laminin_EGF | 878..925 | CDD:278482 | 19/46 (41%) | ||
Laminin_EGF | 928..976 | CDD:278482 | 20/49 (41%) | ||
EGF_Lam | 976..1022 | CDD:238012 | 15/46 (33%) | ||
Domain II and I | 1025..1581 | 115/628 (18%) | |||
Laminin_I | 1225..1470 | CDD:283627 | 54/288 (19%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1382..1413 | 5/30 (17%) | |||
GluZincin | 1433..>1506 | CDD:301352 | 10/75 (13%) | ||
LanA | NP_476617.1 | LamNT | 18..271 | CDD:214532 | 77/252 (31%) |
EGF_Lam | 272..>314 | CDD:238012 | 21/41 (51%) | ||
EGF_Lam | 332..389 | CDD:238012 | 25/56 (45%) | ||
EGF_Lam | 402..443 | CDD:238012 | 1/40 (3%) | ||
EGF_Lam | 448..491 | CDD:238012 | 0/42 (0%) | ||
Laminin_EGF | 495..543 | CDD:278482 | 4/47 (9%) | ||
Laminin_EGF | 541..589 | CDD:278482 | 18/49 (37%) | ||
Laminin_EGF | 587..634 | CDD:278482 | 4/46 (9%) | ||
EGF_Lam | 631..673 | CDD:238012 | 0/41 (0%) | ||
Laminin_EGF | 677..729 | CDD:278482 | 0/51 (0%) | ||
Laminin_EGF | 732..782 | CDD:278482 | 17/49 (35%) | ||
EGF_Lam | 785..828 | CDD:238012 | 7/42 (17%) | ||
CBM6-CBM35-CBM36_like | 831..966 | CDD:271143 | 9/134 (7%) | ||
Laminin_EGF | 1375..1423 | CDD:278482 | 0/47 (0%) | ||
EGF_Lam | 1420..1457 | CDD:238012 | 3/36 (8%) | ||
Laminin_EGF | 1466..1516 | CDD:278482 | 0/49 (0%) | ||
Laminin_EGF | 1514..1562 | CDD:278482 | 0/47 (0%) | ||
LamB | 1632..1760 | CDD:214597 | 5/127 (4%) | ||
Laminin_EGF | <1775..1801 | CDD:278482 | 13/27 (48%) | ||
EGF_Lam | 1808..1851 | CDD:238012 | 26/42 (62%) | ||
EGF_Lam | 1859..1907 | CDD:214543 | 20/47 (43%) | ||
EGF_Lam | 1916..1968 | CDD:238012 | 25/54 (46%) | ||
EGF_Lam | 1969..2015 | CDD:238012 | 20/48 (42%) | ||
EGF_Lam | 2016..>2054 | CDD:238012 | 18/40 (45%) | ||
EGF_Lam | 2063..>2097 | CDD:238012 | 11/33 (33%) | ||
Laminin_I | 2129..2385 | CDD:283627 | 54/272 (20%) | ||
Tar | 2278..2662 | CDD:223910 | 82/412 (20%) | ||
Laminin_II | 2566..2700 | CDD:283628 | 22/107 (21%) | ||
LamG | 2674..2843 | CDD:238058 | |||
LamG | 2878..3029 | CDD:238058 | |||
LamG | 3078..3205 | CDD:214598 | |||
LamG | 3349..3512 | CDD:238058 | |||
LamG | 3535..3689 | CDD:238058 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1836 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |