DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gdf15 and scw

DIOPT Version :9

Sequence 1:NP_001317616.1 Gene:Gdf15 / 23886 MGIID:1346047 Length:303 Species:Mus musculus
Sequence 2:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster


Alignment Length:228 Identity:57/228 - (25%)
Similarity:86/228 - (37%) Gaps:37/228 - (16%)


- Green bases have known domain annotations that are detailed below.


Mouse   101 QLLLRVNRASLSQGLPEAYRVHRALLLLTPTARPWDITRPLKRALSLR-------------GPRA 152
            ::|..||..|..:|..|        ..||.|.|.|...:.|:|...||             |...
  Fly   183 RILGSVNTTSSQRGWLE--------FNLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVT 239

Mouse   153 P-ALRLRLTP--------PPDLAMLPSGGTQLELRLRVAAGRGRRSAHAHPRDSCPLGPGRCCHL 208
            | |.|..|.|        |..|..:.....:.:|..|.|.|.........|.|.  ..|.:.|..
  Fly   240 PQASRTSLEPFIVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDL--YRPPQSCER 302

Mouse   209 ETVQATLEDLGWSDWVLSPRQLQLSMCVGECPH---LYRSANTHAQIKARLHGLQPDKVPAPCCV 270
            .......::|...:||::|::.:...|.|.|..   ...:|..||.::..:|..|| .:|.||||
  Fly   303 LNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQP-HLPKPCCV 366

Mouse   271 PSSYTPV-VLMHRTDSGVSLQTYDDLVARGCHC 302
            |:....: :|.:..:..:.|..|...||:.|.|
  Fly   367 PTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gdf15NP_001317616.1 None
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 21/78 (27%)
TGFB 300..400 CDD:214556 27/101 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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