DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptprq and DIP-delta

DIOPT Version :9

Sequence 1:NP_001357916.1 Gene:Ptprq / 237523 MGIID:1096349 Length:2301 Species:Mus musculus
Sequence 2:NP_001097508.2 Gene:DIP-delta / 5740816 FlyBaseID:FBgn0085420 Length:469 Species:Drosophila melanogaster


Alignment Length:262 Identity:61/262 - (23%)
Similarity:102/262 - (38%) Gaps:66/262 - (25%)


- Green bases have known domain annotations that are detailed below.


Mouse    29 VYD---ITLSSISATTYSSPVSRTLATN-----VSKP-------GPPVFLAGERVGS---AGILL 75
            |||   :.|:.:|.....:.:  .:|||     |||.       .|.:::..:.||:   ..:.:
  Fly   199 VYDADVLPLTKVSRNEMGAYL--CIATNGVPPSVSKRIILDVEFSPMIWVPNQLVGAPSGTDVTI 261

Mouse    76 SWNTPPNPNGRIISYVVKYKEVCP--WMQTAYTR--VRAKPDSLEVLLTNLNPGTTYEIKVAAEN 136
            ..:|..:|.. ||.:|.....|.|  ..:|.||.  .||   .:::.:.||..|.....:..::|
  Fly   262 DCHTEAHPKA-IIYWVYNSVMVLPSKKYKTDYTENSYRA---HMKLTIRNLQYGDFGNYRCISKN 322

Mouse   137 SAG-----IGVFSDPFLFQTAESAPGK-VVNLTVEALNYSAVNLIWYLPRQPNGKITSFKISVKH 195
            |.|     |.|:..|.     .|.|.| |.:.|||    |..|.|  :|...|....|.:..|.:
  Fly   323 SLGETEGSIRVYEIPL-----PSTPSKQVTHTTVE----SRENNI--IPSSRNDTTKSLQTDVGY 376

Mouse   196 ARSGIVVKDVSIKVEDLLSGKLPECNENSDSFLWSTTSPSPTLSRATPPLRTTHLSNTLARNKIS 260
            |..           .||..|....          |::..|.:.:.::..::|:.|...:|.|.:|
  Fly   377 AMK-----------NDLYPGSASS----------SSSGGSSSAASSSSSMQTSALPGGVAGNSLS 420

Mouse   261 SV 262
            |:
  Fly   421 SM 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtprqNP_001357916.1 FN3 57..151 CDD:238020 24/112 (21%)
FN3 308..393 CDD:238020
fn3 399..>441 CDD:365830
FN3 570..654 CDD:238020
fn3 668..744 CDD:365830
FN3 762..850 CDD:238020
fn3 857..934 CDD:365830
FN3 951..1049 CDD:238020
FN3 1056..1137 CDD:238020
FN3 1152..1233 CDD:238020
FN3 1247..1337 CDD:238020
FN3 1342..1421 CDD:238020
FN3 1432..1535 CDD:238020
FN3 1542..1638 CDD:238020
FN3 1645..1734 CDD:238020
UP_III_II 1759..1928 CDD:297589
R-PTPc-Q 2033..2256 CDD:350464
DIP-deltaNP_001097508.2 IG 51..143 CDD:214652
Ig 145..238 CDD:416386 11/40 (28%)
Ig strand A 145..149 CDD:409353
Ig strand A' 154..159 CDD:409353
Ig strand B 165..172 CDD:409353
Ig strand C 178..183 CDD:409353
Ig strand C' 185..187 CDD:409353
Ig strand D 195..199 CDD:409353 61/262 (23%)
Ig strand E 203..209 CDD:409353 1/5 (20%)
Ig strand F 216..223 CDD:409353 0/8 (0%)
Ig strand G 230..238 CDD:409353 3/7 (43%)
Ig 242..333 CDD:416386 22/94 (23%)
Ig strand A' 250..253 CDD:409353 1/2 (50%)
Ig strand B 259..266 CDD:409353 0/6 (0%)
Ig strand C 272..277 CDD:409353 2/4 (50%)
Ig strand C' 281..283 CDD:409353 0/1 (0%)
Ig strand D 289..293 CDD:409353 1/3 (33%)
Ig strand E 295..305 CDD:409353 2/12 (17%)
Ig strand F 314..322 CDD:409353 0/7 (0%)
Ig strand G 325..334 CDD:409353 2/8 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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