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Protein Alignment CARHSP1 and lin-28
DIOPT Version :9
Sequence 1: | XP_005255285.3 |
Gene: | CARHSP1 / 23589 |
HGNCID: | 17150 |
Length: | 168 |
Species: | Homo sapiens |
Sequence 2: | NP_647983.1 |
Gene: | lin-28 / 38639 |
FlyBaseID: | FBgn0035626 |
Length: | 195 |
Species: | Drosophila melanogaster |
Alignment Length: | 75 |
Identity: | 28/75 - (37%) |
Similarity: | 38/75 - (50%) |
Gaps: | 17/75 - (22%) |
- Green bases have known domain annotations that are detailed below.
Human 67 RRTRTFSATVRASQ----------GPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVE---- 117
|||.:.|:|..|:. |.|..|.||.|..:||.||:||.|||.::|:|.|.::
Fly 12 RRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGF 76
Human 118 ---GEYVPVE 124
||...||
Fly 77 RSLGEQEEVE 86
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
CARHSP1 | XP_005255285.3 |
None |
lin-28 | NP_647983.1 |
CSP_CDS |
41..101 |
CDD:239905 |
20/46 (43%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1278 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
User_Submission |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.810 |
|
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