DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PSD4 and Psd4

DIOPT Version :10

Sequence 1:NP_036587.2 Gene:PSD4 / 23550 HGNCID:19096 Length:1056 Species:Homo sapiens
Sequence 2:NP_001128353.1 Gene:Psd4 / 311785 RGDID:1310289 Length:1007 Species:Rattus norvegicus


Alignment Length:1073 Identity:713/1073 - (66%)
Similarity:782/1073 - (72%) Gaps:83/1073 - (7%)


- Green bases have known domain annotations that are detailed below.


Human     1 MMGDYRLPDHPQPMEILNLYLGDSLEPHPGECPRETCSHEDPPEPFEEQTWATDPPEPTRQNVPP 65
            |||     ||.:|||.||:.|.|:|:|||...|.|...|..|.||.:|.||             |
  Rat     1 MMG-----DHLRPMEFLNICLEDNLQPHPEAYPSEVHGHPGPSEPCQEHTW-------------P 47

Human    66 WGSGVELTHLGSWVHQDGLEPCQEQTRATDPPESTRQDAPPWGSGVELTHLGSPSAQREHRQNTA 130
            :                            |||||.|.||....|.||.:|||:.....|..|..|
  Rat    48 F----------------------------DPPESARPDAHHGDSDVEPSHLGNRLVHGEASQAPA 84

Human   131 SPGSPVNSHLPGSPKQNRSTSTQVVFWAGILQAQMCVLDLEEELEKTEGLKAGLKCCLPTPPVDL 195
            |..|..::...|||:||||:||||||||||||||||||||||||||||||||||:||:|.|..|.
  Rat    85 SSRSLEDNSSLGSPQQNRSSSTQVVFWAGILQAQMCVLDLEEELEKTEGLKAGLRCCIPPPSKDF 149

Human   196 PGDTGLH-SSPPENEDSGEDSSEPEGEGQAWLREGTPDSSPQWGAEEESMFFSNPLFLASPCSEN 259
            .||.||. |.|.|:||||:|||..|.|.|.|.::..|.|||:|||||:|:||.|||||.||||:.
  Rat   150 LGDVGLKPSRPKEDEDSGDDSSGSEEENQTWPKKKMPGSSPEWGAEEDSIFFDNPLFLESPCSDT 214

Human   260 SASGECFSWGASDSHAGVRTGPESPATLEPPLPEDTVLWELESEPDLGDGAAISGHC-TPPFPVP 323
            |..|||||||..:||..::|.|..|.||:.||.|.|.||..|::.|||...|....| |||||||
  Rat   215 STEGECFSWGYPNSHLDMKTWPHRPQTLDSPLQEGTGLWTQENDLDLGSNTADHSRCSTPPFPVP 279

Human   324 IYKPHSICWASVAAAEGAPAAPPGH-GE-SEGDRLGPAPSAAPCVDEALTWESGCVGSDLGPA-A 385
            .||.|. |.| :.:.||||..||.. || |..|.:||....||.||..|..||...||||.|| .
  Rat   280 SYKMHP-CLA-LGSTEGAPIVPPDQVGETSWEDDVGPGSPKAPSVDHELIQESDNFGSDLRPATT 342

Human   386 HPVQPWASLSPEGW---------QRGGPFWPQVTLNSQDRDEREGGHPQESLPCTLAPCPWRSPA 441
            ||||||.|..|:..         ....|..||..|.||:..||:.|..||.:.||||  ||.|.|
  Rat   343 HPVQPWGSQIPQSLSDLAPPLHEDLQDPSRPQKPLISQNGGERDAGCFQEPMLCTLA--PWGSQA 405

Human   442 SSPEPSSPESESRGPGPRPSPASSQEGSPQLQHHSSGILPKWTLDASQSSLLETDGEQPSSLKKK 506
            |..|||.|||..||.||||||.||||.|||.|.||.    ||..|.|..||||.|..:.|||||.
  Rat   406 SLLEPSCPESGGRGSGPRPSPVSSQESSPQDQLHSL----KWPQDTSHPSLLEKDKSELSSLKKD 466

Human   507 EAGEAPKPGEEVKSEGTARPAETGDVQPDIHLTSAEHENLRTPMNSSWLPGSPMP--QAQSPEEG 569
            |..|.|...:|.:.|.|:|..:....:..:||.|||           .||.||||  :||||||.
  Rat   467 ETEEVPSLMQEAECEDTSRSEDASVTEHHVHLASAE-----------GLPESPMPPEEAQSPEED 520

Human   570 QRP-PAGDKLANGVRNNKVAWNLASRLYRLEGFRKSEVAAYLQKNNDFSRAVAEEYLSFFQFGGQ 633
            .|| |:.:|:||.:||::.|||||.|||:|.|||||||||:|:|||||||||||.|||||||.||
  Rat   521 WRPSPSREKMANSIRNDEGAWNLALRLYQLNGFRKSEVAAHLRKNNDFSRAVAEAYLSFFQFEGQ 585

Human   634 SLDRALRSFLQALVLSGETQERERILYQFSRRFHHCNPGIFPSVDSVHTLTCAIMLLNTDLHGQN 698
            |||||||.||||||||||||||||||||||:|||:||||.|||||||||||||||||||||||||
  Rat   586 SLDRALRGFLQALVLSGETQERERILYQFSKRFHYCNPGAFPSVDSVHTLTCAIMLLNTDLHGQN 650

Human   699 IGKSMSCQEFITNLNGLRDGGNFPKELLKALYWSIRSEKLEWAVDEEDTARPEKAQPSLPAGKMS 763
            ||||||||||:||||||:||||||||||||||||||||||||||||||.|||||.|||..|||:|
  Rat   651 IGKSMSCQEFVTNLNGLQDGGNFPKELLKALYWSIRSEKLEWAVDEEDAARPEKDQPSPSAGKIS 715

Human   764 KPFLQLAQDPTVPTYKQGILARKMHQDADGKKTPWGKRGWKMFHTLLRGMVLYFLKQGEDHCLEG 828
            .||||||||||:|||||||||||||.|||||||||||||||||||||||||||||| ||...|:|
  Rat   716 SPFLQLAQDPTMPTYKQGILARKMHHDADGKKTPWGKRGWKMFHTLLRGMVLYFLK-GEGQWLDG 779

Human   829 ESLVGQMVDEPVGVHHSLATPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMSSWIARINLAAAT 893
            |||||.|:|||||||||||:||||||||||||||||||||||||||||||||:||||||||||||
  Rat   780 ESLVGHMMDEPVGVHHSLASPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMASWIARINLAAAT 844

Human   894 HSAPPFPAAVGSQRRFVRPILPVGPAQSSLEEQHRSHENCLDAAADDLLDLQRNLPERRGRGREL 958
            ||||||||||||||||||||||:|||||||||||||||||||||:||||||||||||||||.|||
  Rat   845 HSAPPFPAAVGSQRRFVRPILPMGPAQSSLEEQHRSHENCLDAASDDLLDLQRNLPERRGRSREL 909

Human   959 EEHRLRKEYLEYEKTRYETYVQLLVARLHCPSDALDLWEEQLGREAGGTREPKLSLKKSHSSPSL 1023
            ||:||||||||:|||||||||||||||||.|...|.|||:|||.||...:||:.|||||||||||
  Rat   910 EEYRLRKEYLEHEKTRYETYVQLLVARLHFPLKDLALWEDQLGNEADSCQEPRPSLKKSHSSPSL 974

Human  1024 HQDEAPTTAKVKRNISERRTYRKIIPKRNRNQL 1056
            |||||||||||||||||||||||||||||||||
  Rat   975 HQDEAPTTAKVKRNISERRTYRKIIPKRNRNQL 1007

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSD4NP_036587.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 25..71 14/45 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 87..149 24/61 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 195..239 23/44 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 340..362 11/23 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 388..533 71/153 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 546..581 17/37 (46%)
Sec7 570..738 CDD:238100 144/168 (86%)
PH_EFA6 772..900 CDD:270107 116/127 (91%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1004..1056 45/51 (88%)
Psd4NP_001128353.1 Sec7 536..690 CDD:238100 137/153 (90%)
PH_EFA6 724..851 CDD:270107 116/127 (91%)

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