DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TARDBP and SLIRP1

DIOPT Version :10

Sequence 1:NP_031401.1 Gene:TARDBP / 23435 HGNCID:11571 Length:414 Species:Homo sapiens
Sequence 2:NP_001027083.1 Gene:SLIRP1 / 3772560 FlyBaseID:FBgn0064117 Length:90 Species:Drosophila melanogaster


Alignment Length:84 Identity:30/84 - (35%)
Similarity:48/84 - (57%) Gaps:4/84 - (4%)


- Green bases have known domain annotations that are detailed below.


Human    90 ASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTE 154
            |::..||.::|.:   :.|..|||....|:|:.||..||.|:...|..|.:||.|||:|||.|..
  Fly     4 AAAVAKVGKSVHR---IFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNS 65

Human   155 YETQVKVMS-QRHMIDGRW 172
            .....|:.: |:|:::|.:
  Fly    66 LTALEKIENEQKHILEGNY 84

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TARDBPNP_031401.1 TDP43_N 4..77 CDD:465833
Nuclear localization signal. /evidence=ECO:0000269|PubMed:18957508 82..98 3/7 (43%)
RRM1_TDP43 105..178 CDD:409760 26/69 (38%)
RRM2_TDP43 191..261 CDD:409761
Interaction with UBQLN2. /evidence=ECO:0000269|PubMed:23541532 216..414
Nuclear export signal. /evidence=ECO:0000269|PubMed:18957508 239..250
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..303
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 341..373
SLIRP1NP_001027083.1 RRM_SLIRP 16..88 CDD:409688 26/72 (36%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.