DRSC/TRiP Functional Genomics Resources

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Protein Alignment CUX2 and ct

DIOPT Version :10

Sequence 1:NP_056082.2 Gene:CUX2 / 23316 HGNCID:19347 Length:1486 Species:Homo sapiens
Sequence 2:NP_524764.1 Gene:ct / 44540 FlyBaseID:FBgn0004198 Length:2175 Species:Drosophila melanogaster


Alignment Length:1856 Identity:439/1856 - (23%)
Similarity:649/1856 - (34%) Gaps:639/1856 - (34%)


- Green bases have known domain annotations that are detailed below.


Human   112 LDDRLQPPSFDPSGQPRRDLHTSWKRNPELLSPKEQREGTSPAGPTLTEGSRLPGIPGKALLTET 176
            |||..:....|.......: :.|.:.|.:.:....|:|       |.||.|            .|
  Fly   275 LDDEEEDEEEDEDEDDEEE-NASMQSNADDMELDAQQE-------TRTEPS------------AT 319

Human   177 LLQRNEAEKQKGLQEVQITLAARLGEAEEKIKVLHSALKATQAELLELRRK-------YDEEAAS 234
            ..|:::.:..:.|:|.:     ..|||...:...|:...:..:    ..||       .::..||
  Fly   320 TQQQHQQQDTEDLEENK-----DAGEASLNVSNNHNTTDSNNS----CSRKNNNGGNESEQHVAS 375

Human   235 KA--DEVGLIMTNLEKANQRAEAAQREVESLREQLASVNSSIRLACCSPQGPSGDKVNFTLCSGP 297
            .|  |:.....||....|..:..|.....:.....:|..:|.:....:....:|...        
  Fly   376 SAEDDDCANNNTNTSNNNNTSNTATSNTNNNNNNNSSSGNSEKRKKKNNNNNNGQPA-------- 432

Human   298 RLEAALASKDREILRLLKDVQHLQSSLQELEEASANQIADLERQLTAKSEAIEKLEEKLQAQSDY 362
               ..||:||:||..||.::|.|::.    |:....||..||..|..|.:.|.:||.:|..| ..
  Fly   433 ---VLLAAKDKEIKALLDELQRLRAQ----EQTHLVQIQRLEEHLEVKRQHIIRLEARLDKQ-QI 489

Human   363 EEIKTELSILKA----------------MKL---------ASSTCSLPQGMA------------- 389
            .|...|.:.|.|                .||         |||...||:...             
  Fly   490 NEALAEATALSAAASTNNNNNSQSSDNNKKLNTAAERPMDASSNADLPESTKAPVPAEDDEEDED 554

Human   390 ------------KPEDS------------------------LLIAKEAFFPT------------- 405
                        |||||                        |.|.||...|.             
  Fly   555 QAMLVDSEEAEDKPEDSHHDDDEDEDEDREAVNATTTDSNELKIKKEQHSPLDLNVLSPNSAIAA 619

Human   406 -----------------QKFLLEKPSLLASPEEDPSEDDSIKDSLGTEQSYPSPQQ--------- 444
                             |..|:|:...||:........|::.:....:|.....||         
  Fly   620 AAAAAAAAACANDPNKFQALLIERTKALAAEALKNGASDALSEDAHHQQQQHHQQQHQHQQQHHQ 684

Human   445 -----------LPPPPGPEDPLSPSP----------GQPLLGPS----LGPDGTRTFSLSPFP-- 482
                       |...|......:|:.          |..||.||    |....|.:.|.|..|  
  Fly   685 QQHLHQQHHHHLQQQPNSGSNSNPASNDHHHGHHLHGHGLLHPSSAHHLHHQTTESNSNSSTPTA 749

Human   483 ------------------------SLAS---GERLMM-------PPAAFKGEAGGLLVFPPAFYG 513
                                    ||||   |.:.:|       ...|....|.......|.|..
  Fly   750 AGNNNGSNNSSSNTNANSTAQLAASLASTLNGTKSLMQEDSNGLAAVAMAAHAQHAAALGPGFLP 814

Human   514 AKP--PTAPATPAPGPEPLGGPEPADG-----GGGGAAGPGAE---------------------- 549
            ..|  ..|.|..|.|.:..|....||.     .|...||...|                      
  Fly   815 GLPAFQFAAAQVAAGGDGRGHYRFADSELQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMD 879

Human   550 ---EEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIK 611
               .:.|||..|:.:|:|.|..||||||:|..|:||||||:|||:|::||||.|||.||::.:.|
  Fly   880 KYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRK 944

Human   612 MKQFLSDEQNVLALRTIQVRQRGSITPRIRTPETG--------SDDAIKSILEQA---------- 658
            |..:..|:..|:.|::: :.::.|..|:......|        |:|.|..||.:|          
  Fly   945 MHAWACDDNAVMLLKSL-IPKKDSGLPQYAGRGAGGAGGDDSMSEDRIAHILSEASSLMKQSSVA 1008

Human   659 --KKEIESQKGGE-----------PKTSVAP-------LSIANGTTPASTSEDAIKSILEQARRE 703
              :::.....|||           |::..:|       |.......|...:....:...||..||
  Fly  1009 QHREQERRSHGGEDSHSNEDSKSPPQSCTSPFFKVENQLKQHQHLNPEQAAAQQREREREQRERE 1073

Human   704 MQAQ-------QQALLEMEV---APRGRSVPP---SPP---ERPSLATASQNGAPALV------- 745
            .|.:       :.|.|..|:   .||..:.|.   ||.   ....:..|:.|..||:.       
  Fly  1074 QQQRLRHDDQDKMARLYQELIARTPRETAFPSFLFSPSLFGGAAGMPGAASNAFPAMADENMRHV 1138

Human   746 ----------KQEEGSGGPAQAPLPVLSP-AAFVQSIIRKVKS-EIGDAGYFDHHWASDRGLLSR 798
                      .|::.....|||..|..|. .|..|.::...:. .:..|...|......|..|..
  Fly  1139 FEREIAKLQQHQQQQQAAQAQAQFPNFSSLMALQQQVLNGAQDLSLAAAAAKDIKLNGQRSSLEH 1203

Human   799 PYASVSPSLSSSSSSGYSGQPNGRAWPRGDEAPVPPEDEAAAGAEDEPPRTGELKAEGATAEAGA 863
            ...|.|.|........|....:||. ..|...|.||...:..|.....|.|......||::.:.|
  Fly  1204 SAGSSSCSKDGERDDAYPSSLHGRK-SEGGGTPAPPAPPSGPGTGAGAPPTAAPPTGGASSNSAA 1267

Human   864 RLPYYPAYVP-----------------------------------------RTLKPTVPPLTPEQ 887
            ..|...:.:|                                         |..|..:||:|.:|
  Fly  1268 PSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQ 1332

Human   888 YELYMYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPF 952
            ::  |:..::|.::.|:|||.|::..|.||:|||.|||||||||||:|:|||||..|||||||||
  Fly  1333 FD--MFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPF 1395

Human   953 IRMQLWLSDQ--LGQAVGQQ----------PGASQASPTEPRSSPSPPPSPTEP------EKSSQ 999
            |||:::|.|:  :.:.|..|          .|:...||..|:...|...:.:.|      |...|
  Fly  1396 IRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLASKMQAASLPMQKMMSELKLQ 1460

Human  1000 EP--------------LSLSLESSK---------------------------------ENQQP-- 1015
            ||              :|.:::..:                                 :.|.|  
  Fly  1461 EPAQAQHLMQQMQAAAMSAAMQQQQVAQAQQQAQQAQQAQQHLQQQAQQHLQQQQHLAQQQHPHQ 1525

Human  1016 EGRSSSSLSGKMY----------------------SGSQAPGG---------------------- 1036
            :...:::.:..::                      :|...|||                      
  Fly  1526 QHHQAAAAAAALHHQSMLLTSPGLPPQHAISLPPSAGGAQPGGPGGNQGSSNPSNSEKKPMLMPV 1590

Human  1037 ----------------IQEIVAMSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDL 1085
                            :.|:.|::.:|||:.||.::||.|..||:||::|||::|||:|||||:|
  Fly  1591 HGTNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSEL 1655

Human  1086 LSRPKPWHKLSLKGREPFVRMQLWLNDPHNVEKLRDMKKLEKKAYLKRRYGLISTG-------SD 1143
            ||:|||||.||:||||||:||||||:|.:|||:|:.:|...::|..:||    |||       ||
  Fly  1656 LSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRR----STGPNQQDNSSD 1716

Human  1144 SESPATR---SECPSP--------CLQPQDLSLLQIKKPRVVLAPEEKEALRKAYQLEPYPSQQT 1197
            :.|..|.   :..|.|        ...|.       ||.||:.:.|:|||||.|:.|:|||:..|
  Fly  1717 TSSNDTNDFYTSSPGPGSVGSGVGGAPPS-------KKQRVLFSEEQKEALRLAFALDPYPNVGT 1774

Human  1198 IELLSFQLNLKTNTVINWFHNYRSRMRREMLVEGTQDEPDLDPSGGPGILPPGHSHPDPTPQSPD 1262
            ||.|:.:|.|.|.|:.|||||:|.|:::::            |.|     |.|..:|.|:     
  Fly  1775 IEFLANELGLATRTITNWFHNHRMRLKQQV------------PHG-----PAGQDNPIPS----- 1817

Human  1263 SETEDQKPTVKELELQEGPEENSTPLTTQDKAQVRI-KQEQMEEDAEEEAGSQPQDSGELDKGQG 1326
                                ..||..|..|..|.|| .|:::.|..:|..|.           .|
  Fly  1818 --------------------RESTSATPFDPVQFRILLQQRLLELHKERMGM-----------SG 1851

Human  1327 PPKEEHPDPP--------GND--GLP------KVAPGPLLPGGSTPD------------------ 1357
            .|   .|.||        |..  |:|      ..|......|.|..|                  
  Fly  1852 AP---IPYPPYFAAAAILGRSLAGIPGAAAAAGAAAAAAAVGASGGDELQALNQAFKEQMSGLDL 1913

Human  1358 -CPSLHPQQ--------ESEAGERLHPDPLSFKSASESSRCSLEVSLNSPSAASSPGLMMSVSPV 1413
             .|:|..::        |.|.|.....|..|.:......:.:....:...||.::....||.:..
  Fly  1914 SMPTLKRERSDDYQDDLELEGGGHNLSDNESLEGQEPEDKTTDYEKVLHKSALAAAAAYMSNAVR 1978

Human  1414 PSSSAPISP---SPPGA--PPAKVPSASPTADMAGA 1444
            .|...|.:|   :|.||  .|:.|.:|...|..|.|
  Fly  1979 SSRRKPAAPQWVNPAGAVTNPSAVVAAVAAAAAAAA 2014

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CUX2NP_056082.2 PRK03918 <17..>269 CDD:235175 30/165 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..167 10/52 (19%)
Smc <179..>379 CDD:440809 48/233 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 415..481 18/99 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 517..549 10/36 (28%)
CUT 553..625 CDD:460543 38/71 (54%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 661..690 7/46 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 716..758 12/67 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 800..858 14/57 (25%)
CUT 892..965 CDD:460543 44/74 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 964..1032 16/154 (10%)
CUT 1043..1119 CDD:460543 49/75 (65%)
Homeodomain 1169..1225 CDD:459649 30/55 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1231..1453 52/263 (20%)
ctNP_524764.1 CUT 886..955 CDD:460543 37/68 (54%)
CUT 1338..1413 CDD:460543 43/74 (58%)
CUT 1616..1691 CDD:460543 50/74 (68%)
Homeodomain 1746..1802 CDD:459649 30/55 (55%)

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