DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SPART and spart

DIOPT Version :10

Sequence 1:NP_055902.1 Gene:SPART / 23111 HGNCID:18514 Length:666 Species:Homo sapiens
Sequence 2:XP_031751587.1 Gene:spart / 100170472 XenbaseID:XB-GENE-990805 Length:594 Species:Xenopus tropicalis


Alignment Length:650 Identity:373/650 - (57%)
Similarity:458/650 - (70%) Gaps:70/650 - (10%)


- Green bases have known domain annotations that are detailed below.


Human     1 MEQE--PQNGEPAEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKE 63
            ||:.  |:|.|...::.|.:.|:|||.::||||:|||.|.||||:||||||..||:||::||.:.
 Frog     3 MEKNAPPENLENTLLRSIEDEYRKAFKYINKGLSTDETGYKEEARNYYKQGQEHLIRGLNISLQR 67

Human    64 SEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGLATSL------QNDLQEVPKLYPEFPP--K 120
            .|.|||.|::|||||.||:||||||.|||.||::.| |||      :|...::|.|||..||  |
 Frog    68 PEFTGPAWDNARQMQAKMEETLQNVNTRLNILQQSL-TSLPSNSAAENASSQMPALYPALPPKEK 131

Human   121 DMCEKLPEPQSFSSAPQHAEVNGNTSTPSAGAVAAPASLSLPSQSCPAEAPPAYTPQAAEGHYTV 185
            :..|:.|.|.|.....:...|||.:|.||:..| .|..   |....|  .||||||||.||||||
 Frog   132 EKPERPPPPISLVCPSEPCPVNGFSSVPSSETV-QPID---PIMGAP--TPPAYTPQATEGHYTV 190

Human   186 SYGTDSGEFSSVGEEFYRNHSQPPPLETLGLDADELILIPNGVQIFFVNPAGEVSAPSYPGYLRI 250
            ||||:|||.|:||.|||...:||||:::||:||:||||||.|||||||...|.|:||||||||||
 Frog   191 SYGTESGELSTVGVEFYSMAAQPPPVQSLGVDAEELILIPQGVQIFFVTADGLVTAPSYPGYLRI 255

Human   251 VRFLDNSLDTVLNRPPGFLQVCDWLYPLVPDRSPVLKCTAGAYMFPDTMLQAAGCFVGVVLSSEL 315
            ::|:|.:.:...||||.|||||||||||:..:||||:...|.|||||.|.|..|.:|||||||||
 Frog   256 IKFMDTNSEVAQNRPPAFLQVCDWLYPLMCTQSPVLRTNTGVYMFPDVMSQLPGSYVGVVLSSEL 320

Human   316 PEDDRELFEDLLRQMSDLRLQANWNRAEEENEFQIPGRTRPSSDQLKEASGTDVKQLDQGNKDVR 380
            |..|:||||||||||||||:|                   ||                       
 Frog   321 PIADQELFEDLLRQMSDLRIQ-------------------PS----------------------- 343

Human   381 HKGKRGKRAKDTSSEEVNLSHIVPCEPVPEEKPKELPEWSEKVAHNILSGASWVSWGLVKGAEIT 445
                      :.:||.:::|..|....:|||:.|||||||||||..|||||||:||||.||||:|
 Frog   344 ----------EAASEVIDVSQTVHIITIPEEEEKELPEWSEKVAQGILSGASWISWGLAKGAELT 398

Human   446 GKAIQKGASKLRERIQPEEKPVEVSPAVTKGLYIAKQATGGAAKVSQFLVDGVCTVANCVGKELA 510
            .|||.||||||||.||||:||:||||.|.|||::||||||||.|||||||||||::|:|||:|||
 Frog   399 EKAIHKGASKLREHIQPEDKPLEVSPTVAKGLHVAKQATGGAVKVSQFLVDGVCSIASCVGRELA 463

Human   511 PHVKKHGSKLVPESLKKDKDGKSPLDGAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTV 575
            ||||||||||:||||||||||||||||||.||||.||||:|||||||.|.|.|..:|::|||.|:
 Frog   464 PHVKKHGSKLLPESLKKDKDGKSPLDGAMAVAASGVQGFATVWQGLEFAGKNIAKSVASETVHTI 528

Human   576 RYKYGYNAGEATHHAVDSAVNVGVTAYNINNIGIKAMVKKTATQTGHTLLEDYQIVDNSQRENQE 640
            ::|||.:||..|.:||.||:|||.||:||:||||||:|||||.:|.|.:|::|:| :..|.|.:|
 Frog   529 KHKYGKDAGHVTDNAVHSAMNVGATAFNIDNIGIKALVKKTAKETSHAILDEYKI-NKKQDEKEE 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SPARTNP_055902.1 MIT_spastin 16..95 CDD:239142 50/78 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..156 11/31 (35%)
Ubiquitin-binding region (UBR) domain. /evidence=ECO:0000269|PubMed:37443287 190..380 100/189 (53%)
LC3-interacting region (LIR), mediates interaction with MAP1LC3A AND MAP1LC3C. /evidence=ECO:0000269|PubMed:37443287 193..200 4/6 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 344..398 4/53 (8%)
Senescence 427..617 CDD:462037 144/189 (76%)
Required for localization to lipid droplets. /evidence=ECO:0000269|PubMed:37443287 431..503 56/71 (79%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 636..666 1/4 (25%)
spartXP_031751587.1 MIT_spastin 20..99 CDD:239142 50/78 (64%)
Senescence 378..571 CDD:462037 145/192 (76%)

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