DRSC/TRiP Functional Genomics Resources

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Protein Alignment KDM4B and Kdm4A

DIOPT Version :10

Sequence 1:NP_001398077.1 Gene:KDM4B / 23030 HGNCID:29136 Length:1130 Species:Homo sapiens
Sequence 2:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster


Alignment Length:448 Identity:237/448 - (52%)
Similarity:305/448 - (68%) Gaps:49/448 - (10%)


- Green bases have known domain annotations that are detailed below.


Human     9 QNPSCKIMTFRPTMEEFKDFNKYVAYIESQGAHRAGLAKIIPPKEWKPRQTYDDIDDV--VIPAP 71
            ||...:||||||:.|||::|:.|:.||||:|||.||||||.||.||.||::..|||::  .||||
  Fly    12 QNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRKSGYDIDNINMTIPAP 76

Human    72 IQQVVTGQSGLFTQYNI-QKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFVSPIYGA 135
            |.|||||..|::.|.|| |::.||:.::...||||.:.||||.|:||||||||||:|::||:|.|
  Fly    77 ICQVVTGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLYAA 141

Human   136 DISGSLYDDDVAQWNIGSLRTILDMVERECGTIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINY 200
            |:.|||.|:|:..||||.|.|||::|..:...||:||||.||||||||::|||||||||||||||
  Fly   142 DVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMDLYSINY 206

Human   201 LHFGEPKSWYAIPPEHGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEA 265
            ||||.||:||||||.:|:|||:||...|..:.|.|:|:||||||:|||.:|:::.||:::|||||
  Fly   207 LHFGAPKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMTMISPKVLRQHNIPYNKITQEA 271

Human   266 GEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDMVKISMDVFVRILQPERY 330
            ||.|||||:|||||||||||.|||||||:.|||:|||.|:.|.||.|||||||:.|||..|||||
  Fly   272 GEIMITFPFGYHAGFNHGFNGAESTNFASKRWIEYGKRASICRCRSDMVKISMETFVRRFQPERY 336

Human   331 ELWKQGKDLTVLDHT----RPTALTSPELSSWSASRASLKAKLLRRQISLKENRHWRKTEEE--- 388
            :.|.:|:|:..  |.    :..|...|.|:.:..                :||....|:|||   
  Fly   337 DNWLKGQDMGC--HPEEPGKICAAAPPTLNEYEK----------------QENLRAAKSEEESPQ 383

Human   389 -RKPSL-----ERKKEQTK----RPGLSSHR--KRSQP-----KKPK----PEDPKFP 425
             |..||     ||..|..:    :..:||:.  ::.||     |.|.    ||....|
  Fly   384 KRGCSLAGNGCERNAESAEDVDDKASVSSYSSCRQLQPVVKLRKLPTIASVPEPSSAP 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KDM4BNP_001398077.1 JmjN 15..56 CDD:128818 28/40 (70%)
JmjC 176..292 CDD:396791 84/115 (73%)
PHD_JMJD2B 717..822 CDD:277051
ePHD_JMJD2B 831..940 CDD:277184
Tudor_JMJD2B_rpt1 953..1006 CDD:410535
Tudor_JMJD2B_rpt2 1010..1065 CDD:410538
Kdm4ANP_610331.1 JmjN 17..59 CDD:472837 28/41 (68%)
JmjC 182..298 CDD:396791 84/115 (73%)
Blue background indicates that the domain is not in the aligned region.

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