DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SPEN and B52

DIOPT Version :9

Sequence 1:NP_055816.2 Gene:SPEN / 23013 HGNCID:17575 Length:3664 Species:Homo sapiens
Sequence 2:NP_001014619.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SPENNP_055816.2 RRM1_SHARP 7..81 CDD:240794
RRM <8..>81 CDD:223796
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 70..89
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 103..164
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 183..209
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 225..330
RRM2_SHARP 336..409 CDD:240795
RRM3_SHARP 436..509 CDD:240796
RRM4_SHARP 510..586 CDD:240797
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 678..871
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 918..941
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 957..1020
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1070..1287
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1366..1397
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1497..1524
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1588..2171
BASP1 1595..1804 CDD:283191
Interaction with MSX2. /evidence=ECO:0000250 2130..2464
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2185..2532
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2566..2590
Collagen_mid <2645..>2723 CDD:292606
Interaction with RBPSUH. /evidence=ECO:0000250 2709..2870
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2775..2806
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2847..2875
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2978..3010
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3022..3047
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3135..3156
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3208..3265
SID/RD 3417..3664
SPOC 3509..3630 CDD:285043
B52NP_001014619.2 RRM1_SRSF4_like 5..74 CDD:240783
RRM2_SRSF4_like 120..191 CDD:241044
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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