DRSC/TRiP Functional Genomics Resources

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Protein Alignment SPEN and din-1

DIOPT Version :10

Sequence 1:NP_055816.2 Gene:SPEN / 23013 HGNCID:17575 Length:3664 Species:Homo sapiens
Sequence 2:NP_496485.2 Gene:din-1 / 174782 WormBaseID:WBGene00008549 Length:2407 Species:Caenorhabditis elegans


Alignment Length:40 Identity:14/40 - (35%)
Similarity:17/40 - (42%) Gaps:2/40 - (5%)


- Green bases have known domain annotations that are detailed below.


Human   282 TPALNPLIYSLRNKEVTGALRRIF--GKWLGPAHFLGSSF 319
            |.|....|..|..|...|.::.|.  ||||..:..|.|.|
 Worm    72 TKAFKEAITKLAPKAADGGVQLIVPPGKWLTGSFNLTSHF 111

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SPENNP_055816.2 RRM1_SHARP 7..81 CDD:409784
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 70..89
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 103..164
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 183..209
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 225..330 14/40 (35%)
RRM2_SHARP 336..409 CDD:409785
RRM3_SHARP 436..509 CDD:409786
RRM4_SHARP 510..586 CDD:409787
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 678..871
PTZ00121 <776..1630 CDD:173412
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 918..941
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 957..1020
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1070..1287
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1366..1397
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1497..1524
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1588..2171
PRK10263 <1657..>2249 CDD:236669
PHA03307 1989..>2371 CDD:223039
Interaction with MSX2. /evidence=ECO:0000250 2130..2464
PHA03247 <2183..2588 CDD:223021
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2185..2532
DUF5585 2564..2954 CDD:465521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2566..2590
Collagen_mid <2645..>2723 CDD:435053
Interaction with RBPSUH. /evidence=ECO:0000250 2709..2870
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2775..2806
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2847..2875
PHA03247 <2948..3488 CDD:223021
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2978..3010
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3022..3047
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3135..3156
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3208..3265
SID/RD 3417..3664
SPOC_SHARP 3504..3664 CDD:439206
din-1NP_496485.2 RRM_SF 15..75 CDD:473069 1/2 (50%)
RRM_SF 288..>335 CDD:473069
Herpes_BLLF1 <749..1008 CDD:282904
PRK12323 <1621..1970 CDD:481241
ARGLU <2045..2100 CDD:405931
SPOC_SHARP 2219..2384 CDD:439206
Blue background indicates that the domain is not in the aligned region.

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