DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RAB18 and Rab35

DIOPT Version :10

Sequence 1:NP_001243339.1 Gene:RAB18 / 22931 HGNCID:14244 Length:235 Species:Homo sapiens
Sequence 2:NP_608373.1 Gene:Rab35 / 33014 FlyBaseID:FBgn0031090 Length:201 Species:Drosophila melanogaster


Alignment Length:226 Identity:88/226 - (38%)
Similarity:123/226 - (54%) Gaps:43/226 - (19%)


- Green bases have known domain annotations that are detailed below.


Human    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWVTLHQQTANFFL 74
            |:||||:|||||||||:||:||||......|||||||::|:.::|.:.||.||            
  Fly    10 KLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIW------------ 62

Human    75 KSQIGNSPILKWAMWQYDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC 139
                             ||||||||||:|.:||||..|||:|||||..::|..:..||.|::..|
  Fly    63 -----------------DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNC 110

Human   140 TRNDIV-NMLVGNKIDKENREVDRNE-GLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ-- 200
               |:| .:|||||.|..:|:|...| ..:||::..:...|.|||....|:..|..:..:::.  
  Fly   111 ---DVVKKVLVGNKNDDPDRKVVITEDAQRFAKQMDIELFETSAKDNINVENMFLSITRQVLDHK 172

Human   201 ---TPGLWESENQNKGVKLSHREEGQGGGAC 228
               :|    :|.|...:.|....:|..||.|
  Fly   173 LRTSP----NEQQKDTLHLKPNPKGSKGGKC 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RAB18NP_001243339.1 Rab18 9..198 CDD:206656 80/189 (42%)
Rab35NP_608373.1 Rab35 3..201 CDD:133310 88/226 (39%)

Return to query results.
Submit another query.